Scaffold Ga0244775_10007085

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10007085
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11060
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (71.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002546	Metagenome / Metatranscriptome	549	Y
F006846	Metagenome / Metatranscriptome	363	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y
F031101	Metagenome	183	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100070851	F002546	N/A	VLGSIATFITGTLAGILIGNSGAKDIMAAQLQNKEVDAKNTQADKKLEAEIDATAARLAAKPDGQMPAEQPVDTDWDKD
Ga0244775_1000708510	F077310	N/A	MTLDSNSIIIVIVASILSGMGTALVKEIKESKREKIRRAEREQDMLKMELKDLEIKLYKLEKDLTEWRDRYYEALQELIEVKAELEDTLIKLNHIVMHE
Ga0244775_1000708513	F016396	AGGA	MRKSERLRLLEMQVVRLEMMVELYTQTLNNLLESQGLHTPTQLDAGKWYKAKLDTLDNE
Ga0244775_1000708519	F014017	N/A	MDDLIKYLDENHRKKIADEIRYLELPPEWRPNEVIRYIVRIIEKNNG
Ga0244775_1000708524	F006846	AGGA	MIHDLVERYLMRPKRLREAIQHVVRENDELLRIIKRHEEDDTPTNLTWSEGDTWYGWTYSPEKKRYYFDDIGNKSLMGLWEDQWAREKERGE
Ga0244775_1000708530	F031101	GGTGG	MNDLFWYSRKLREAVSTTGMENGWDDEKCKEVFDQLMDKYLVSKDLK
Ga0244775_100070855	F012975	GGAG	VLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNVKGMFRKDQWGITERISVSEQGIWKLPSKYVKHFK
Ga0244775_100070857	F000473	AGG	MEFINRDKEHFKYGVNEWTGEPNKPVFYTPEMAKRIRDIKKPDTALQMDIAKYPEFLAIRLYEDNFVKYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN