NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003330

Scaffold Ga0244775_10003330


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003330 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17094
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F003965Metagenome / Metatranscriptome459Y
F050376Metagenome / Metatranscriptome145Y
F051930Metagenome / Metatranscriptome143Y
F085708Metagenome / Metatranscriptome111Y
F096663Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000333013F051930AGGAGMKVQYVSAYISMSEEGLVEKFLCPVDQSILFSNQNLSDEIYLYCLECDYTKNIGISTYEEIVKAVKRNAKM
Ga0244775_1000333023F003965AGGMITLNTMCREHNPMKSAISEVLDTQYTFCQDCEQNIERWYDDTDPERLPMWTNWRVR
Ga0244775_1000333026F085708GGAMNRLITTLVQIALLVPALYMGRMMWREIVADFREWDNSH
Ga0244775_1000333027F050376AGGMTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAE
Ga0244775_1000333028F000447AGGAGGMGYVEIFRIDDEGAGWVDLSEATPDELFNIELGLLNEGAFE
Ga0244775_1000333031F096663GAGGMKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCD
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