Scaffold Ga0244775_10001871

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001871
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23645
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003379	Metagenome / Metatranscriptome	490	Y
F004051	Metagenome / Metatranscriptome	455	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F020168	Metagenome / Metatranscriptome	225	Y
F029434	Metagenome / Metatranscriptome	188	Y
F030095	Metagenome / Metatranscriptome	186	N
F050376	Metagenome / Metatranscriptome	145	Y
F051930	Metagenome / Metatranscriptome	143	Y
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100018711	F099281	GGA	MATVNKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGNYSTDTYSMTFDS
Ga0244775_1000187110	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLHNHTAKLQVRDTQGGKKLAFTLTEQDGLTISSVEGKIKISISADRTNKMFFPKSAYDLVLVDPSVNKTRLLEGYMTLNRAVTV
Ga0244775_1000187114	F051930	AGGAG	MRIQYVSTYISMSEDGLVEKLLCPVDQSILFCNQSLLDEIYLYCIECDYKKLLGLSTYQKIVKEVDKNV
Ga0244775_1000187120	F003379	AGGAG	MKKVWALIVLIATAILSGAMLSKFLNWAGEREIFDFDLSEDIDNEELSAL
Ga0244775_1000187125	F050376	AGAAGG	MNLDEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAN
Ga0244775_1000187127	F029434	GAG	MKRYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAI
Ga0244775_1000187133	F017134	GAGG	MELFTVACLNYEICGAQETFETESEYEILGDDYICAECYASDEMSFFETIGWADSDALASAGHGMDEDY
Ga0244775_1000187135	F020168	GAG	MYDVIGSILGICLIAFLCSPIVLAVYMWNGAKFDDDNDGIEDLPNRW
Ga0244775_1000187138	F004051	GAGG	MTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLELPSKETRWTSVSAKTLLG
Ga0244775_1000187140	F017829	AGG	MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLISNAKKVEVGI