Scaffold Ga0244775_10000596

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000596
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44117
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (16.44%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F024318	Metagenome	206	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F042328	Metagenome	158	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F048316	Metagenome / Metatranscriptome	148	Y
F049637	Metagenome / Metatranscriptome	146	N
F065775	Metagenome	127	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100005962	F005529	GAG	MARTLPKSKLDYSIEIRYKESSGQWSAWMNKGKGSFQSIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGQPTGEVISLK
Ga0244775_1000059623	F020344	N/A	VAVFVFIIMVIITKGSNSVIYIPLFDKRLTSSNSYIFLFEHEVTKEQVTLTLSDTSPFKERYSKFAITQASFTTGTVGFWRYNVTQSGSGSTVIATGKMELTAVNLSTAGVVRYNGYNGNYKTYTTT
Ga0244775_1000059626	F029443	N/A	MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQIPVIA
Ga0244775_1000059627	F049637	N/A	MTMIEKDAVGIPSTLIAIFANVTTIAGLQFVNVIFTLIISILSIVYLIYKIGNERKKNKDNGKS
Ga0244775_1000059629	F048316	GGA	MKKFLDWAKGFLSEGGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPTDKNENQS
Ga0244775_1000059633	F001775	GAG	MEFSTDNQKIRIAILAFIAGVILAFVVFPRPEVETVYKFETKVETDTIYTRVVDTVYVPKISIKSHFLRDTILKDYQPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTAINDFKIPVVTNTITNTETKTILQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHTLGISKKLF
Ga0244775_1000059634	F036704	N/A	MWIEIDVMLAGSTMDWKELGLEVKHEFVRRMVRVDDIAYVQELVNDIQIIYFYDKTSCLIRGSYTEIRDELLHLDQEGQLD
Ga0244775_1000059637	F008081	N/A	MEESEIINPFGFGKASRVIDENRKPTEWWIDYVSINQAIAENEFYILFEDGCLVKKGRSKFRSSQYLKGDRFRSFKEFHESAV
Ga0244775_1000059639	F047062	N/A	MNDSENYFDKEITFTHEGQDYLWIGDYTIETFGEEESEWAPPYGEMEVKIDHTQSLTSYEHGFDVIPTPAIMEALELEIERNY
Ga0244775_1000059644	F024318	GGA	MSNYLYLGKFIKRPGDLAPKGVKSTYQTEKLPFNETFERIWQLASMKP
Ga0244775_1000059649	F044503	N/A	MRRRNLTEYEKIVIFEKWQDRVPTKVIAMEMGVSYMCIFNQLKKRCLVG
Ga0244775_1000059651	F093880	GGTGG	MKAEDLQKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYEVKGTTLMLQDEIRVRNQFEKQWFKDVATRSGSYQDMKENIDKHFPT
Ga0244775_1000059657	F005529	N/A	MARGLPKSQLDYSLEIRYKLSSGEWSAWMNKGKGCFQSIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK
Ga0244775_1000059661	F042328	N/A	MDTKPKIRLGNGKKRSDSWLTAAICLSDCHAHAYTYNGKTYVNVNINIFDKPNDFGKDVAITLNDYKKEENNNSQVNKMPTALAPVQEEEYDLPF
Ga0244775_1000059662	F065775	N/A	MSNFQLNFNSEKKVISITLDNEDGIFDLAHLFKKLLDDAGIANSLEEKDITPVEPLQVANEKLD