Scaffold Ga0244777_10000359

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000359
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36260
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (96.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F015592	Metagenome / Metatranscriptome	253	Y
F025684	Metagenome	200	Y
F029412	Metagenome	188	Y
F100683	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000035921	F015592	AGAAG	MKFLTALLGVLNKLLGFWVEHRWKRQGRQETIKEMNEAINDQIALGEAAIVIPDADRDERLRDRFDRSRQ
Ga0244777_1000035923	F100683	AGG	MTDHAAATVEALEELIALLRAGYSPEDLGDAVILLGRLMARRT
Ga0244777_1000035933	F025684	AGAAGG	MTDYDYDDEDDELALPERYIERAGETLAYRLMEYLEMLGVIGKDHVSYLRYPPIELIEDAEKALRDEA
Ga0244777_1000035934	F029412	AGGA	MIKERIEALRKRERVCWDMSEVFLHAKDAHGLHDMGVEIQGIQWALRELEGLLLK
Ga0244777_1000035936	F009516	AGGAG	MPRPMTYPIGTLEVGESATMPATKKGDAKRTSRNVSQYGIRNGKCFKCRTVGGVTFITRL
Ga0244777_1000035937	F014495	AGGA	MIKTQQAAPMGRKHRVSSDSAWPLRGLDGKTFAERRAMREKEQAKCLDQ