Scaffold Ga0255147_1000012

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000012
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 162364
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (52.43%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F010681	Metagenome / Metatranscriptome	300	Y
F011752	Metagenome / Metatranscriptome	287	Y
F016639	Metagenome / Metatranscriptome	245	Y
F017641	Metagenome / Metatranscriptome	239	Y
F022640	Metagenome / Metatranscriptome	213	Y
F024290	Metagenome / Metatranscriptome	206	Y
F048809	Metagenome / Metatranscriptome	147	Y
F049578	Metagenome / Metatranscriptome	146	Y
F055691	Metagenome / Metatranscriptome	138	Y
F058109	Metagenome	135	Y
F085647	Metagenome / Metatranscriptome	111	Y
F087139	Metagenome / Metatranscriptome	110	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100001213	F024290	N/A	MTLEEILEEYGQEVLDTYYELFPDKSISKFPDRFCGFVGEYSDFVLDCYYSTGSDELEPIEHFENGVFQEYYYYDEKTSTGFVFYNER
Ga0255147_1000012200	F000860	GGA	MLPKILSQDSNYDEWCEQEILNAYKEAAECDEFMFGDYDFCKEWLGENT
Ga0255147_1000012203	F011752	AGGA	MNATTEDIVAHVRSWSLDRAADMSIPKEDARAILAEFYEWIEPEDDELEIVSLEPEDY
Ga0255147_100001228	F010681	GGA	MKMRLNPNQQFWANIFRCAVERSNIYFNEKDLDRHAREHTTVVLALQKGEQFWKELL
Ga0255147_100001229	F048809	GGA	MIRKFIEWFFTSTEIFVEDDVYSKLLELELRIEALEAESVENSNCFYELSNSIDAVDARIDILTLENWNKNDV
Ga0255147_100001239	F090331	N/A	MSIVLGVAIYAALVAFVSSIMLYYLKVMYSREEAKLKEKSK
Ga0255147_100001251	F085647	N/A	MLWQDRNGNWFSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0255147_100001263	F017641	AGGA	VSDSYLDPLKCTYSMSTTTEMDQVFHYVTNWKEGKVMQMFIQQITPEYQECDHKYVAIALNPVTNKSMVMSNPRSHYDTLQWVRKFCGSFSLLY
Ga0255147_100001268	F022640	N/A	MRIAFLIATIALGFKVAIPAYATVNEYQERQADQFCQIDPNYCK
Ga0255147_100001273	F055691	N/A	MSTYTSPLTSKVYEIVKTSHTRNAWDSEGNLTPYVQSVFDIYHEGKKVQFALTAEGVAESVAHLENPGRDVSSRFD
Ga0255147_100001274	F058109	N/A	MIETDFYILSEEQFAQFSQLAEEINVSIDYYLCEFCDVSGPLIEV
Ga0255147_100001278	F087139	N/A	MLLSKQSFNNQQVLPFIVKKEDEYTEEGSYSLHLFSRIVITKEGKKYRYLPLRFEGEEARFRKRSDAEDYARYRLALD
Ga0255147_100001281	F049578	N/A	MRTLKYKHLGDMRIIRVAQITTDILPQLQEVMQQLEENGEDSREVILRVLSDIEDRLGN
Ga0255147_100001284	F016639	N/A	MSKQVLLSLLAQGNNGSEILSILDAIVADNVAGFDYIESPQLESALGIPTLEEIAF