NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090331

Metagenome / Metatranscriptome Family F090331

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090331
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 41 residues
Representative Sequence MSIALAIAIYTALVAFVSSLMVYYFKVMYPREEAQLKEKSK
Number of Associated Samples 56
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 24.07 %
% of genes near scaffold ends (potentially truncated) 17.59 %
% of genes from short scaffolds (< 2000 bps) 61.11 %
Associated GOLD sequencing projects 52
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (43.519 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(22.222 % of family members)
Environment Ontology (ENVO) Unclassified
(37.037 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(44.444 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 0.00%    Coil/Unstructured: 43.48%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF02086MethyltransfD12 7.41
PF04851ResIII 6.48
PF01555N6_N4_Mtase 3.70
PF07460NUMOD3 1.85
PF07669Eco57I 0.93
PF04965GPW_gp25 0.93
PF01541GIY-YIG 0.93
PF14328DUF4385 0.93
PF13392HNH_3 0.93
PF136402OG-FeII_Oxy_3 0.93
PF02672CP12 0.93
PF137592OG-FeII_Oxy_5 0.93
PF00856SET 0.93
PF136612OG-FeII_Oxy_4 0.93
PF02945Endonuclease_7 0.93
PF05433Rick_17kDa_Anti 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0338DNA-adenine methylaseReplication, recombination and repair [L] 7.41
COG3392Adenine-specific DNA methylaseReplication, recombination and repair [L] 7.41
COG0863DNA modification methylaseReplication, recombination and repair [L] 3.70
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 3.70
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 3.70


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.48 %
UnclassifiedrootN/A43.52 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001213|JGIcombinedJ13530_106933571Not Available537Open in IMG/M
3300002835|B570J40625_100761444Not Available857Open in IMG/M
3300005512|Ga0074648_1026126All Organisms → Viruses → Predicted Viral3081Open in IMG/M
3300005527|Ga0068876_10008710Not Available6795Open in IMG/M
3300005527|Ga0068876_10021807All Organisms → Viruses → Predicted Viral4048Open in IMG/M
3300005662|Ga0078894_10049853All Organisms → Viruses → Predicted Viral3544Open in IMG/M
3300005805|Ga0079957_1004100Not Available12201Open in IMG/M
3300005805|Ga0079957_1004709Not Available11279Open in IMG/M
3300005805|Ga0079957_1064873All Organisms → Viruses → Predicted Viral2142Open in IMG/M
3300006637|Ga0075461_10129380All Organisms → Viruses782Open in IMG/M
3300006802|Ga0070749_10053686All Organisms → Viruses → Predicted Viral2449Open in IMG/M
3300006802|Ga0070749_10110920All Organisms → Viruses1616Open in IMG/M
3300006802|Ga0070749_10675901Not Available553Open in IMG/M
3300007538|Ga0099851_1228950All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2670Open in IMG/M
3300007541|Ga0099848_1100059Not Available1113Open in IMG/M
3300007541|Ga0099848_1113027All Organisms → Viruses → Predicted Viral1032Open in IMG/M
3300007541|Ga0099848_1253588Not Available614Open in IMG/M
3300007542|Ga0099846_1284261Not Available569Open in IMG/M
3300007545|Ga0102873_1219129Not Available571Open in IMG/M
3300007600|Ga0102920_1153359Not Available738Open in IMG/M
3300007644|Ga0102902_1055691All Organisms → Viruses → Predicted Viral1184Open in IMG/M
3300008448|Ga0114876_1078407All Organisms → Viruses → Predicted Viral1380Open in IMG/M
3300010293|Ga0116204_1036187All Organisms → Viruses → Predicted Viral1905Open in IMG/M
3300010354|Ga0129333_10002313Not Available17699Open in IMG/M
3300010354|Ga0129333_10009562Not Available9162Open in IMG/M
3300010354|Ga0129333_10009823Not Available9037Open in IMG/M
3300010354|Ga0129333_10032632All Organisms → Viruses → Predicted Viral4916Open in IMG/M
3300010354|Ga0129333_10077606All Organisms → Viruses → Predicted Viral3083Open in IMG/M
3300010354|Ga0129333_10096377All Organisms → Viruses → Predicted Viral2734Open in IMG/M
3300010354|Ga0129333_10118829All Organisms → Viruses → Predicted Viral2436Open in IMG/M
3300010354|Ga0129333_10140225All Organisms → Viruses → Predicted Viral2221Open in IMG/M
3300010354|Ga0129333_10151302All Organisms → Viruses → Predicted Viral2129Open in IMG/M
3300010354|Ga0129333_10176765All Organisms → Viruses → Predicted Viral1950Open in IMG/M
3300010354|Ga0129333_10547958All Organisms → Viruses → Predicted Viral1009Open in IMG/M
3300010354|Ga0129333_10579062Not Available976Open in IMG/M
3300010354|Ga0129333_10644816Not Available915Open in IMG/M
3300010354|Ga0129333_11217571Not Available625Open in IMG/M
3300010354|Ga0129333_11380655Not Available580Open in IMG/M
3300010354|Ga0129333_11513111Not Available549Open in IMG/M
3300010354|Ga0129333_11746069Not Available505Open in IMG/M
3300010370|Ga0129336_10162418All Organisms → Viruses → Predicted Viral1286Open in IMG/M
3300010370|Ga0129336_10506451Not Available650Open in IMG/M
3300010389|Ga0136549_10002666Not Available13372Open in IMG/M
3300011984|Ga0119931_1010744All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST41006Open in IMG/M
3300013087|Ga0163212_1118058All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-H38847Open in IMG/M
(restricted) 3300013126|Ga0172367_10025263Not Available5396Open in IMG/M
3300020074|Ga0194113_10004152Not Available19063Open in IMG/M
3300020074|Ga0194113_10099282All Organisms → Viruses → Predicted Viral2558Open in IMG/M
3300020074|Ga0194113_10408597All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae995Open in IMG/M
3300020074|Ga0194113_10433063Not Available958Open in IMG/M
3300020074|Ga0194113_10803639All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage S-SM2643Open in IMG/M
3300020083|Ga0194111_10043213All Organisms → Viruses → Predicted Viral4076Open in IMG/M
3300020083|Ga0194111_10091890All Organisms → Viruses → Predicted Viral2466Open in IMG/M
3300020109|Ga0194112_10816618All Organisms → Viruses608Open in IMG/M
3300020151|Ga0211736_10070449All Organisms → Viruses → Predicted Viral4110Open in IMG/M
3300020151|Ga0211736_10392355All Organisms → Viruses → Predicted Viral1685Open in IMG/M
3300020151|Ga0211736_10691616Not Available966Open in IMG/M
3300020161|Ga0211726_10093911Not Available6310Open in IMG/M
3300020172|Ga0211729_10398929All Organisms → Viruses → Predicted Viral1139Open in IMG/M
3300020179|Ga0194134_10020883All Organisms → Viruses → Predicted Viral4340Open in IMG/M
3300020183|Ga0194115_10028695All Organisms → Viruses → Predicted Viral4008Open in IMG/M
3300020183|Ga0194115_10227914All Organisms → Viruses897Open in IMG/M
3300020183|Ga0194115_10331699All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage S-SM2680Open in IMG/M
3300020190|Ga0194118_10015258All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6228Open in IMG/M
3300020190|Ga0194118_10030928All Organisms → Viruses → Predicted Viral3801Open in IMG/M
3300020190|Ga0194118_10521455All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage S-SM2564Open in IMG/M
3300020190|Ga0194118_10524872All Organisms → Viruses561Open in IMG/M
3300020204|Ga0194116_10032514All Organisms → Viruses → Predicted Viral4014Open in IMG/M
3300020204|Ga0194116_10378084Not Available709Open in IMG/M
3300020204|Ga0194116_10521399Not Available553Open in IMG/M
3300020214|Ga0194132_10161622All Organisms → Viruses → Predicted Viral1314Open in IMG/M
3300020214|Ga0194132_10261373Not Available938Open in IMG/M
3300020221|Ga0194127_10831364Not Available567Open in IMG/M
3300021323|Ga0210295_1107539All Organisms → Viruses → Predicted Viral2200Open in IMG/M
3300021376|Ga0194130_10308188Not Available876Open in IMG/M
3300021959|Ga0222716_10240649All Organisms → Viruses → Predicted Viral1122Open in IMG/M
3300021960|Ga0222715_10006453Not Available9913Open in IMG/M
3300021960|Ga0222715_10010331Not Available7495Open in IMG/M
3300021961|Ga0222714_10003411All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes16209Open in IMG/M
3300021961|Ga0222714_10007828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9700Open in IMG/M
3300021961|Ga0222714_10026802All Organisms → Viruses → Predicted Viral4367Open in IMG/M
3300021961|Ga0222714_10081323All Organisms → Viruses → Predicted Viral2111Open in IMG/M
3300021961|Ga0222714_10102375All Organisms → Viruses → Predicted Viral1808Open in IMG/M
3300021962|Ga0222713_10103362All Organisms → Viruses → Predicted Viral2038Open in IMG/M
3300021962|Ga0222713_10577890Not Available659Open in IMG/M
3300021963|Ga0222712_10000386All Organisms → Viruses60081Open in IMG/M
3300022198|Ga0196905_1171688Not Available551Open in IMG/M
3300022198|Ga0196905_1188456Not Available520Open in IMG/M
3300022200|Ga0196901_1070261All Organisms → Viruses → Predicted Viral1267Open in IMG/M
3300024289|Ga0255147_1000012All Organisms → Viruses162364Open in IMG/M
3300024487|Ga0255222_1064122Not Available556Open in IMG/M
3300025283|Ga0208048_1078487Not Available726Open in IMG/M
3300025647|Ga0208160_1167691Not Available520Open in IMG/M
3300025828|Ga0208547_1163694All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2625Open in IMG/M
(restricted) 3300028043|Ga0233417_10214758Not Available849Open in IMG/M
3300029930|Ga0119944_1001480All Organisms → Viruses → Predicted Viral4147Open in IMG/M
3300029930|Ga0119944_1005718All Organisms → Viruses → Predicted Viral1994Open in IMG/M
3300029930|Ga0119944_1033213All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae657Open in IMG/M
3300029930|Ga0119944_1040247Not Available580Open in IMG/M
3300029930|Ga0119944_1045687Not Available533Open in IMG/M
3300029933|Ga0119945_1006668All Organisms → Viruses → Predicted Viral1575Open in IMG/M
3300031857|Ga0315909_10213623All Organisms → Viruses → Predicted Viral1516Open in IMG/M
3300031857|Ga0315909_10290437All Organisms → Viruses → Predicted Viral1229Open in IMG/M
3300031857|Ga0315909_10811211Not Available590Open in IMG/M
3300033418|Ga0316625_101320965Not Available670Open in IMG/M
3300033521|Ga0316616_102973458Not Available639Open in IMG/M
3300034066|Ga0335019_0000126Not Available45778Open in IMG/M
3300034103|Ga0335030_0208277All Organisms → Viruses → Predicted Viral1357Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake22.22%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient17.59%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous12.96%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water10.19%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic5.56%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.63%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.63%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.70%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake2.78%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake2.78%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.78%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.85%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.93%
Anoxic Lake WaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water0.93%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.93%
Drinking Water Treatment PlantEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant0.93%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.93%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.93%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007545Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3EnvironmentalOpen in IMG/M
3300007600Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3EnvironmentalOpen in IMG/M
3300007644Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02EnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300010293Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300011984Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107EnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020083Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300mEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020204Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surfaceEnvironmentalOpen in IMG/M
3300020214Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80mEnvironmentalOpen in IMG/M
3300020221Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100mEnvironmentalOpen in IMG/M
3300021323Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300024289Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300024487Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025283Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033521Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_BEnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10693357133300001213WetlandMSIGFAIAIYTALVAFVSSTVLYYFKVMYPREEQQLKEKLK*
B570J40625_10076144433300002835FreshwaterMSLGIAFAIYTTLVAFVSSIMIYYFRVMYPREEHQLKENSK*
Ga0074648_102612633300005512Saline Water And SedimentMSIALAIAIYTALIAFVSSLMVYYFKVMYPREEAQLREKSK*
Ga0068876_10008710153300005527Freshwater LakeMSIGLAFTIYTALVAFVSSIMIYYYKVMYPREENQLKEKSK*
Ga0068876_1002180733300005527Freshwater LakeMSIGLGIAIYAALVAFVSSIMIYYYKVMYPTEEAQLKEKSK*
Ga0078894_10049853113300005662Freshwater LakeMSIALAFAIYSALVAVVSSLMIYYWKVMYPQQEAKLKERSK*
Ga0079957_1004100183300005805LakeMTIGLGVVIYISLVAFVSSIMVYYFKVIYPREEAQIKENSK*
Ga0079957_1004709133300005805LakeMSIGIGIAIYTALVAFVSSIMVYYFKVMYPREEAQLKEKSK*
Ga0079957_106487383300005805LakeMSLGIAFAIYTTLVAFVSSIMVYYFGVMYPREEHQLREKSK*
Ga0075461_1012938043300006637AqueousMSIALATLIYTALVAFVSSVMVYYFKVMYPREEAQLREKSK*
Ga0070749_1005368633300006802AqueousMSIALATLIYTALVAFVSSLMVYYFKVMYPREEAQLREKSK*
Ga0070749_1011092043300006802AqueousMSIALAIAIYTALVAFVSSVMVYYFKVMYPREEAQLKEKSK*
Ga0070749_1067590123300006802AqueousMSIALAIAIYSAIVAFVSSLMVYYFKVMYPREEAQLREKS
Ga0099851_122895033300007538AqueousMSLFLGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKSK*
Ga0099848_110005943300007541AqueousMTIALALSIYTALVAVVSSLMVYYFRVMYPQEEKQ
Ga0099848_111302723300007541AqueousMSIALGIAIYTALVAFVSSLMVYYFRVMYPREEQQLRKNPND*
Ga0099848_125358813300007541AqueousMSVGLGIAIYTALVAVVSSMMVYYFRVMYPREEQQLREKSK*
Ga0099846_128426133300007542AqueousMSIALGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKSK*
Ga0102873_121912923300007545EstuarineMSLGIAFAIYTALIAFVSSIMIYYYKVMYPLEEAQLNEKSK*
Ga0102920_115335943300007600EstuarinePRESNSSNEMSLGIAFAIYTALIAFVSSIMIYYYKVMYPLEEAQLNEKSK*
Ga0102902_105569153300007644EstuarineMSLGIAFAIYTALIAFVSSIMIYYYKVMYPLEAAQLNEKSK*
Ga0114876_107840723300008448Freshwater LakeMSLALAFAIYTSLVAFVSSIMIYYLKVMYPREEAQLKEKSK*
Ga0116204_103618753300010293Anoxic Lake WaterMSIGVGIAIYTALVAVVSSLMIYYFRVMYPREEAQLKEKSND*
Ga0129333_10002313403300010354Freshwater To Marine Saline GradientMSIGLGVAIYAALVAFVSSTMIYYFKVMYPAEEAQLKEKSK*
Ga0129333_1000956283300010354Freshwater To Marine Saline GradientMSIAVALAIYTSLIAFVSSIMVYYYKMMYPREEAKLMEKSK*
Ga0129333_10009823213300010354Freshwater To Marine Saline GradientMSIGLGAAIYAALVAFVSSIMVYYFRVMYPTEEAQLKEKSK*
Ga0129333_1003263223300010354Freshwater To Marine Saline GradientMSVGLGIAIYTALVAVVSSLMVYYFRVMYPREEKQLKEKSK*
Ga0129333_1007760653300010354Freshwater To Marine Saline GradientMSIALAIAIYTAIVAFVSSLMVYYIKVMYPREEAQLREKSK*
Ga0129333_1009637763300010354Freshwater To Marine Saline GradientMSIALGIAIYSALVAFISSIMVYYYRVMYPQEEAKLREKSK*
Ga0129333_1011882923300010354Freshwater To Marine Saline GradientMSVGLGIAIYTALVAVVSSLMVYYFRVMYPREEQQLKEKSK*
Ga0129333_1014022533300010354Freshwater To Marine Saline GradientMSIALGIAIYTTLVAVVASLMVYYFRVMYPREEQQLKEKSK*
Ga0129333_1015130263300010354Freshwater To Marine Saline GradientMSIGLGIAIYTALVAVISSLMVYYFRVMYPREEQQLKEKSK*
Ga0129333_1017676553300010354Freshwater To Marine Saline GradientMSIALGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKTK*
Ga0129333_1054795823300010354Freshwater To Marine Saline GradientMSVGLGIAIYTALVAVISSLMVYYFRVMYPREENQLKEKSK*
Ga0129333_1057906223300010354Freshwater To Marine Saline GradientMTIALAIAIYTALIAVVSSLMVYYFRVMYPQEEKQLKEKSK*
Ga0129333_1064481613300010354Freshwater To Marine Saline GradientLGIAIYSTLIAFISSIMVYYYRVMYPQEEAKLKEKSK*
Ga0129333_1121757143300010354Freshwater To Marine Saline GradientMSALVGLAIYSALVAFISSLMIYYYKVMYPREEAELKEKSK*
Ga0129333_1138065523300010354Freshwater To Marine Saline GradientMSIGLAIAIYTALVAVVSSLMVYYFRVMYPQEEKQLREKSK*
Ga0129333_1151311113300010354Freshwater To Marine Saline GradientMSLALGIAIYAALVASISSLMLYYYKVRYPQEEEKLKEKTK*
Ga0129333_1174606923300010354Freshwater To Marine Saline GradientMSLGIVFAIYTTLVAFVSSIMVYYFGVMYPREEHQLREKSK*
Ga0129336_1016241833300010370Freshwater To Marine Saline GradientMSIALAIAIYTAIVAFVSSLMVYYFKVMYPREEAQLREKSK*
Ga0129336_1050645123300010370Freshwater To Marine Saline GradientMSIGLGVAIYAALVAFVSSIMVYYFRVMCPTEEAQLKEKSK*
Ga0136549_10002666253300010389Marine Methane Seep SedimentMTITVALLIYSGLVALVSSLMVYYFKVIRPKEEAQYK*
Ga0119931_101074423300011984Drinking Water Treatment PlantMSIALGITIYTSLVAVVASLMVYYFRVMYPREEQQLKEKSK*
Ga0163212_111805813300013087FreshwaterMSIGLGIAIYTALVAVISSLMVYYFGVIYPREEQELRSKK*
(restricted) Ga0172367_1002526353300013126FreshwaterMSIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLKEKSND*
Ga0194113_1000415293300020074Freshwater LakeVSIGLGIAIYAALVAFVSSIMAYYLKVMYPREEQQLKEKSK
Ga0194113_1009928223300020074Freshwater LakeMSIGLGIAIYTAMVAVVSSLMVYYFGVMYPREEQELKSKK
Ga0194113_1040859733300020074Freshwater LakeMSIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLKEKSNDRLQ
Ga0194113_1043306333300020074Freshwater LakeMTIELAIGIYVALVAFVSSIMVYYFKVMYSREEAQLKENSK
Ga0194113_1080363933300020074Freshwater LakeMSIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLKEKSND
Ga0194111_1004321323300020083Freshwater LakeMSIGLGIAIYTAMVAVVSSLMVYYFGVMYPREEQELRSKK
Ga0194111_1009189023300020083Freshwater LakeMSIGLGIAIYTAILAFVSSLMGYYFKVMYPREEQELKSKK
Ga0194112_1081661813300020109Freshwater LakeMSIGLGITIYAALVAVISSLMVYYFRVMYPRDEQQLKEKSND
Ga0211736_1007044923300020151FreshwaterMSIGLGVAIYATLVAFVSSIMVYYFKVIYPTEEAQLKEKSK
Ga0211736_1039235523300020151FreshwaterMSIGLGVAIYAALVAFVSSIMVYYFKVMYPTEEAQLEEKSK
Ga0211736_1069161623300020151FreshwaterMSIGVAFAIYTSLVAFVSSIIIYYFKVMYPTEEAQLKEKSK
Ga0211726_1009391193300020161FreshwaterMTVGLAFAIYTALVAFVSSIMLYYLKVMYPREENQLKEKSK
Ga0211729_1039892943300020172FreshwaterMSIGVAFAIYTSLVAFVSSIMIYYFKVMYPTEEAQLKEKSK
Ga0194134_1002088343300020179Freshwater LakeMSIGLGVVIYAALVAVVSSLMVYYFRIMYPRDEQQLKEKSNDRLQ
Ga0194115_1002869553300020183Freshwater LakeMSIGVGIAIYAALVAGVSSLMVYYFRVIYPRDEQQLKEKSNDRLQ
Ga0194115_1022791413300020183Freshwater LakeMSIGVGIAIYAALVAGVSSLMVYYFRVIYPRDEQQLKEKS
Ga0194115_1033169933300020183Freshwater LakeIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLKEKSNDQLQ
Ga0194118_10015258203300020190Freshwater LakeMSIGVGIAIYAALVAGVSSLMVYYFRVIYPRDEQQLK
Ga0194118_1003092823300020190Freshwater LakeMSIGLGITIYAALVAVISSLMVYYFRVMYPRDEQQLKEKSNDRLQ
Ga0194118_1052145513300020190Freshwater LakeIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLKEKSNDRLQ
Ga0194118_1052487233300020190Freshwater LakeMSIGVGIAIYTALVAVISSLMVYYFRVIYPREEQQLK
Ga0194116_1003251453300020204Freshwater LakeVSIGLGIAIYSALVAFVSSIMVYYLKVMYPREEQQLKENSK
Ga0194116_1037808423300020204Freshwater LakeMSIGVGIAIYTALVAVISSLMIYYFRVIYPREEQQLKEKSND
Ga0194116_1052139913300020204Freshwater LakeMSIGLGIAIYTALVAVISSLMVYYFGVMYPREEQELRSKK
Ga0194132_1016162213300020214Freshwater LakeVSIGLGIAIYSALVAFVSSIMVYYLKVMYPREEQQ
Ga0194132_1026137343300020214Freshwater LakeMSIGVGIAIYAALVAGVSSLMVYYFRVIYPREEQQLKEKSNDRLQ
Ga0194127_1083136433300020221Freshwater LakeVSIGLGIAIYAALVAFVSSIMAYYLKVMYPREEQQL
Ga0210295_110753943300021323EstuarineMSLGIAFAIYTALIAFVSSIMIYYYKVMYPLEEAQLNEKSK
Ga0194130_1030818813300021376Freshwater LakeMSIELGIAIYTAIVVVISSLMVYYFRVMYPREEAQLKEKSK
Ga0222716_1024064943300021959Estuarine WaterMSIALATLIYTALVAFVSSLMVYYFKVMYPREEAQLREKSK
Ga0222715_10006453133300021960Estuarine WaterMSIALAIAIYTALVAFVSSLMVYYFKVMYPREEAQLKEKSK
Ga0222715_10010331243300021960Estuarine WaterMSIALAIAIYTALVAFVSSLMVYYFKVMYPREEAQLREKSK
Ga0222714_10003411453300021961Estuarine WaterMTLGLAIAIYTALVAFVSSIMLYYLKVMYPREEAQLKEKSK
Ga0222714_10007828223300021961Estuarine WaterMSIGFAIAIYTALVAFVSSTVLYYFKVMYPREEQQLKEKLK
Ga0222714_10026802113300021961Estuarine WaterMSVGLGIAIYTSLVAVVSSLMVYYFRVMYPREEKQLKEKSK
Ga0222714_10081323103300021961Estuarine WaterMSIGFAITIYTTLVAFVSSIMVYYLKVMYPREEHQLKENSK
Ga0222714_1010237513300021961Estuarine WaterMSITLGIAIYSAIVAFVSSLMVYYFKVMYPREEAQLKEKSK
Ga0222713_1010336273300021962Estuarine WaterMSLGIAFAIYSSLVAFVSSIMVYYLKVMYPREEQQLKEKLK
Ga0222713_1057789013300021962Estuarine WaterLFLGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKSK
Ga0222712_10000386673300021963Estuarine WaterMSIGLAFAIYTTLVAFVSTIMLYYLKVIYPREEAQLKEKSK
Ga0196905_117168823300022198AqueousMSIALAIAIYTAIVAFVSSLMVYYIKVMYPREEAQLREKSK
Ga0196905_118845633300022198AqueousMSIGLGIAIYSALVAFISSLMIYYYKVMYPREEAKLREKSK
Ga0196901_107026113300022200AqueousMSLFLGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKSK
Ga0255147_1000012393300024289FreshwaterMSIVLGVAIYAALVAFVSSIMLYYLKVMYSREEAKLKEKSK
Ga0255222_106412223300024487FreshwaterMSLVIAFVIYTTLVAFVSSIMLYYLKVMYPREEAQLKEKSK
Ga0208048_107848723300025283FreshwaterMSIGLGIAIYTALVAVISSLMVYYFGVIYPREEQELRSKK
Ga0208160_116769143300025647AqueousIGLGVAIYAALVAFVSSTMIYYFKVMYPAEEAQLKEKSK
Ga0208547_116369433300025828AqueousMSIALAIAIYTALVAFVSSVMVYYFKVMYPREEAQLKEKSK
(restricted) Ga0233417_1021475823300028043SedimentMSIGLAIAIYTALVAVVSSLMIYYFCVMRPNEEKQSND
Ga0119944_1001480123300029930AquaticMSIGIGIVIYTALVAFVSSIMVYYFKVMYPREEAQLKEKSK
Ga0119944_100571843300029930AquaticMSIALGIAIYTAIVAVISSLMVYYFRVMYPREEAQLKEKSK
Ga0119944_103321323300029930AquaticMSIGLAIATYTALVAVISSLMIYYFRVMYPREEAQLKKEQSND
Ga0119944_104024723300029930AquaticMSIGIGIAIYTALVAFVSSIMVYYFKVMYPREEAQLKENSK
Ga0119944_104568723300029930AquaticMSIALGVAIYSVLVAFVSSVIVYYFKVMYPHEETQLKENSK
Ga0119945_100666843300029933AquaticMSIALGIAIYTVIVAVISSLMVYYFRVMYPREEAQLKEKSK
Ga0315909_1021362313300031857FreshwaterFLGLAIYSALVAFISSLMIYYYKVMYPREEAKLKEKSK
Ga0315909_1029043723300031857FreshwaterMSLALAFAIYTSLVAFVSSIMIYYLKVMYPREEAQLKEKSK
Ga0315909_1081121123300031857FreshwaterMSIAVALAIYTSLIAFVSSIMVYYYKMMYPREEAKLMEKSK
Ga0316625_10132096523300033418SoilMSIAFAFAIYYALVAVVSSLMIYYWKVMYPQQEAKLKERSK
Ga0316616_10297345813300033521SoilMSIALAFAIYSALVAVVSSLMIYYWKVMYPQQEAKLRERSK
Ga0335019_0000126_1194_13193300034066FreshwaterMSLGIAFAIYTTLVAFVSSIMIYYFKVMYPTEEAQLKEKSK
Ga0335030_0208277_1244_13573300034103FreshwaterMSIGLGVAIYAALVAFVSSIMVYYFKVIYPTEEAQLKE


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