NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085647

Metagenome / Metatranscriptome Family F085647

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085647
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 51 residues
Representative Sequence MLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGG
Number of Associated Samples 66
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 6.42 %
% of genes near scaffold ends (potentially truncated) 27.03 %
% of genes from short scaffolds (< 2000 bps) 59.46 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (41.441 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(25.225 % of family members)
Environment Ontology (ENVO) Unclassified
(45.045 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(48.649 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 43.04%    β-sheet: 7.59%    Coil/Unstructured: 49.37%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF04851ResIII 26.13
PF01555N6_N4_Mtase 6.31
PF137592OG-FeII_Oxy_5 2.70
PF14328DUF4385 1.80
PF07460NUMOD3 1.80
PF01541GIY-YIG 0.90
PF02511Thy1 0.90
PF136402OG-FeII_Oxy_3 0.90
PF02086MethyltransfD12 0.90
PF02384N6_Mtase 0.90
PF00856SET 0.90
PF13469Sulfotransfer_3 0.90
PF02945Endonuclease_7 0.90
PF01844HNH 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 6.31
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 6.31
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 6.31
COG0338DNA-adenine methylaseReplication, recombination and repair [L] 0.90
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.90
COG3392Adenine-specific DNA methylaseReplication, recombination and repair [L] 0.90


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms58.56 %
UnclassifiedrootN/A41.44 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000401|BB_Man_B_Liq_inBBDRAFT_1022880Not Available752Open in IMG/M
3300001968|GOS2236_1031377Not Available1729Open in IMG/M
3300002144|M2t2BS2_10565095All Organisms → Viruses → Predicted Viral1827Open in IMG/M
3300002835|B570J40625_100069239All Organisms → Viruses → Predicted Viral4706Open in IMG/M
3300005527|Ga0068876_10008710Not Available6795Open in IMG/M
3300005528|Ga0068872_10342924Not Available821Open in IMG/M
3300005805|Ga0079957_1004709Not Available11279Open in IMG/M
3300005805|Ga0079957_1015942All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5427Open in IMG/M
3300006030|Ga0075470_10001130All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae8319Open in IMG/M
3300006030|Ga0075470_10152569Not Available674Open in IMG/M
3300006637|Ga0075461_10000706All Organisms → Viruses9780Open in IMG/M
3300006641|Ga0075471_10007551Not Available6840Open in IMG/M
3300007538|Ga0099851_1040397All Organisms → Viruses → Predicted Viral1849Open in IMG/M
3300007538|Ga0099851_1328615Not Available536Open in IMG/M
3300007541|Ga0099848_1095071All Organisms → Viruses → Predicted Viral1149Open in IMG/M
3300007562|Ga0102915_1094662Not Available980Open in IMG/M
3300007600|Ga0102920_1236465Not Available587Open in IMG/M
3300008107|Ga0114340_1000384All Organisms → Viruses69672Open in IMG/M
3300008266|Ga0114363_1057203All Organisms → Viruses → Predicted Viral1529Open in IMG/M
3300009000|Ga0102960_1358437Not Available515Open in IMG/M
3300009009|Ga0105105_10096601All Organisms → Viruses → Predicted Viral1420Open in IMG/M
3300009169|Ga0105097_10927280Not Available501Open in IMG/M
3300010297|Ga0129345_1280319Not Available579Open in IMG/M
3300010354|Ga0129333_10002313Not Available17699Open in IMG/M
3300010354|Ga0129333_10024088Not Available5771Open in IMG/M
3300010354|Ga0129333_10025079Not Available5649Open in IMG/M
3300010354|Ga0129333_10077755All Organisms → Viruses → Predicted Viral3080Open in IMG/M
3300010354|Ga0129333_10228145All Organisms → Viruses → Predicted Viral1687Open in IMG/M
3300010354|Ga0129333_10249050All Organisms → Viruses → Predicted Viral1602Open in IMG/M
3300010354|Ga0129333_11076271Not Available673Open in IMG/M
3300010354|Ga0129333_11261066Not Available612Open in IMG/M
3300010354|Ga0129333_11744349All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68505Open in IMG/M
3300010354|Ga0129333_11762915Not Available502Open in IMG/M
3300010370|Ga0129336_10008533All Organisms → Viruses6315Open in IMG/M
3300010370|Ga0129336_10431484All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon717Open in IMG/M
3300011268|Ga0151620_1000197Not Available23568Open in IMG/M
3300011268|Ga0151620_1013536All Organisms → Viruses → Predicted Viral2889Open in IMG/M
3300011984|Ga0119931_1049554Not Available512Open in IMG/M
3300013087|Ga0163212_1071123All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300013087|Ga0163212_1130982Not Available797Open in IMG/M
3300013087|Ga0163212_1199263All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01626Open in IMG/M
(restricted) 3300013126|Ga0172367_10732209All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01518Open in IMG/M
3300013372|Ga0177922_10175038All Organisms → Viruses → Predicted Viral1551Open in IMG/M
3300017788|Ga0169931_10000808All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae52085Open in IMG/M
3300020074|Ga0194113_10002394All Organisms → Viruses25668Open in IMG/M
3300020074|Ga0194113_10062762All Organisms → Viruses3487Open in IMG/M
3300020074|Ga0194113_10067180All Organisms → Viruses → Predicted Viral3332Open in IMG/M
3300020074|Ga0194113_10095711All Organisms → Viruses → Predicted Viral2623Open in IMG/M
3300020074|Ga0194113_10152910All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011914Open in IMG/M
3300020074|Ga0194113_10226619All Organisms → Viruses → Predicted Viral1471Open in IMG/M
3300020074|Ga0194113_10469796Not Available909Open in IMG/M
3300020074|Ga0194113_10644677All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2741Open in IMG/M
3300020074|Ga0194113_10723329All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4688Open in IMG/M
3300020074|Ga0194113_10815525Not Available637Open in IMG/M
3300020083|Ga0194111_10282810All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST41151Open in IMG/M
3300020084|Ga0194110_10125190All Organisms → Viruses → Predicted Viral2068Open in IMG/M
3300020109|Ga0194112_10027376All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6229Open in IMG/M
3300020151|Ga0211736_10070449All Organisms → Viruses → Predicted Viral4110Open in IMG/M
3300020151|Ga0211736_10897873All Organisms → Viruses → Predicted Viral2581Open in IMG/M
3300020160|Ga0211733_10398958All Organisms → Viruses → Predicted Viral3272Open in IMG/M
3300020161|Ga0211726_11003998All Organisms → Viruses → Predicted Viral1737Open in IMG/M
3300020172|Ga0211729_10224027All Organisms → Viruses → Predicted Viral1748Open in IMG/M
3300020172|Ga0211729_11326901Not Available551Open in IMG/M
3300020172|Ga0211729_11410810All Organisms → Viruses → Predicted Viral1148Open in IMG/M
3300020179|Ga0194134_10033656All Organisms → Viruses → Predicted Viral3065Open in IMG/M
3300020179|Ga0194134_10100127Not Available1421Open in IMG/M
3300020183|Ga0194115_10477029Not Available515Open in IMG/M
3300020190|Ga0194118_10058749All Organisms → Viruses → Predicted Viral2496Open in IMG/M
3300020197|Ga0194128_10397289Not Available657Open in IMG/M
3300020197|Ga0194128_10493734All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01563Open in IMG/M
3300020200|Ga0194121_10037999All Organisms → Viruses → Predicted Viral4159Open in IMG/M
3300020200|Ga0194121_10390789All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01690Open in IMG/M
3300020220|Ga0194119_10686784Not Available619Open in IMG/M
3300020570|Ga0208465_1000372Not Available13154Open in IMG/M
3300021091|Ga0194133_10250877Not Available1120Open in IMG/M
3300021091|Ga0194133_10470272All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01664Open in IMG/M
3300021093|Ga0194123_10040295All Organisms → Viruses → Predicted Viral3204Open in IMG/M
3300021093|Ga0194123_10194327Not Available1044Open in IMG/M
3300021323|Ga0210295_1013620All Organisms → Viruses → Predicted Viral2943Open in IMG/M
3300021424|Ga0194117_10032051All Organisms → Viruses → Predicted Viral3255Open in IMG/M
3300021424|Ga0194117_10254208Not Available845Open in IMG/M
3300021425|Ga0213866_10517711Not Available566Open in IMG/M
3300021960|Ga0222715_10261748All Organisms → Viruses → Predicted Viral1001Open in IMG/M
3300021960|Ga0222715_10585357Not Available578Open in IMG/M
3300021961|Ga0222714_10007828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9700Open in IMG/M
3300021961|Ga0222714_10071204All Organisms → Viruses → Predicted Viral2304Open in IMG/M
3300021961|Ga0222714_10090719All Organisms → Viruses → Predicted Viral1962Open in IMG/M
3300021961|Ga0222714_10148926All Organisms → Viruses → Predicted Viral1407Open in IMG/M
3300021961|Ga0222714_10217418All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1092Open in IMG/M
3300021962|Ga0222713_10080438All Organisms → Viruses → Predicted Viral2383Open in IMG/M
3300021962|Ga0222713_10221387All Organisms → Viruses → Predicted Viral1252Open in IMG/M
3300021963|Ga0222712_10007524All Organisms → Viruses10492Open in IMG/M
3300021963|Ga0222712_10029375All Organisms → Viruses → Predicted Viral4385Open in IMG/M
3300021963|Ga0222712_10522422All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon698Open in IMG/M
3300021964|Ga0222719_10016492All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales5958Open in IMG/M
3300021964|Ga0222719_10442133All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes797Open in IMG/M
3300022198|Ga0196905_1110122All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon729Open in IMG/M
3300024289|Ga0255147_1000012All Organisms → Viruses162364Open in IMG/M
3300025283|Ga0208048_1091291Not Available653Open in IMG/M
3300025585|Ga0208546_1000826All Organisms → Viruses10335Open in IMG/M
3300025646|Ga0208161_1107978Not Available756Open in IMG/M
3300025732|Ga0208784_1001300Not Available10588Open in IMG/M
3300025889|Ga0208644_1308410Not Available625Open in IMG/M
3300027793|Ga0209972_10282564Not Available738Open in IMG/M
3300029930|Ga0119944_1005070All Organisms → Viruses → Predicted Viral2133Open in IMG/M
3300029930|Ga0119944_1030224Not Available700Open in IMG/M
3300031963|Ga0315901_11101248Not Available546Open in IMG/M
3300033994|Ga0334996_0007237Not Available7520Open in IMG/M
3300034280|Ga0334997_0822296Not Available558Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake25.23%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous12.61%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water12.61%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient11.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.21%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.21%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake2.70%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.70%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.80%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.80%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.80%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic1.80%
Drinking Water Treatment PlantEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant0.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.90%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.90%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.90%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.90%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.90%
Bioluminescent BayEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay0.90%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine0.90%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000401Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B LiquidEnvironmentalOpen in IMG/M
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002144Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007562Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02EnvironmentalOpen in IMG/M
3300007600Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3EnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009009Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011268Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555EnvironmentalOpen in IMG/M
3300011984Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107EnvironmentalOpen in IMG/M
3300013087Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30LEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020083Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300mEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020200Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50mEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300020570Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021093Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surfaceEnvironmentalOpen in IMG/M
3300021323Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R9.63AS (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021424Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surfaceEnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300024289Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300025283Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)EnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300034280Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BB_Man_B_Liq_inBBDRAFT_102288023300000401Bioluminescent BayMLWQDRNGTWHSTVSPIDIKIRNAMIEANANKVWEEKERSGDWLFDEMFGGD*LTTRAL*
GOS2236_103137743300001968MarineMLWQDRNGNWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
M2t2BS2_1056509533300002144MarineMLWQDRNGNWFSTKSTLDIKIERAMIEANANKVWEEKERSGDWLFDEMFGG*
B570J40625_100069239143300002835FreshwaterMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0068876_1000871033300005527Freshwater LakeMLWQDRNGNWFSTKSALDIKIERAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0068872_1034292423300005528Freshwater LakeMLWQDRNGTWHSTISPIDIKVQEAMIQANANRVWEEKELSGDALFEEFYGG*
Ga0079957_100470923300005805LakeMLWQDRNGNWFSTVSPIDAKIERAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0079957_101594213300005805LakeMLWQDSRGNWNSTKSALDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0075470_1000113093300006030AqueousMLWQDRNGNWFSTVSPIDIKIEKAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0075470_1015256913300006030AqueousHDTFTMLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEEKERSGDLLFDELFGG*
Ga0075461_10000706173300006637AqueousMLWQDRNGNWFSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGGD*
Ga0075471_1000755153300006641AqueousMLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEEKERSGDLLFDELFGG*
Ga0099851_104039733300007538AqueousLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0099851_132861513300007538AqueousNIMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0099851_136128123300007538AqueousMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEK
Ga0099849_130352233300007539AqueousHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0099848_109507133300007541AqueousMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSG
Ga0102915_109466223300007562EstuarineMLWQDRNGNWFMTKSAIDMKIEQAMIAENANKVWEEKERSGDWLFDEMFGG*
Ga0102920_123646533300007600EstuarineSPPNCPNSVGTTLKTMLWQDRNGNWFMTKSAIDMKIEQAMIAENANKVWEEKERSGDWLFDEMFGG*
Ga0114340_1000384443300008107Freshwater, PlanktonMLWQDRNGNWFSTKSTLDIQIERAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0114363_105720333300008266Freshwater, PlanktonMLWQDRNGNWFSTKSALDIKIERAMIDANANKVWEEKERPGDWLFDEMFGG*
Ga0102960_135843723300009000Pond WaterMLWQDRNGTWHSTVSPIDMKSEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0105105_1009660153300009009Freshwater SedimentMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKECSG
Ga0105097_1092728013300009169Freshwater SedimentMLWQDRNGNWFSTKSTLDIKIEQAMIAENANKVWEEGERSGDWLFDEMFGG*
Ga0129345_128031923300010297Freshwater To Marine Saline GradientMLWQDRNGTWHSTVSPIDIKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0129333_10002313283300010354Freshwater To Marine Saline GradientMLWQDRNGNWFSTKSILDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0129333_10024088183300010354Freshwater To Marine Saline GradientMLWQDRNGNWFMTKSALDMKIEQAMIAENAKKVWEEKERSGDWLFDEMFGG*
Ga0129333_1002507943300010354Freshwater To Marine Saline GradientMLWQDRNGNWFMTKSALDMKIEQAMIAENANKVWEEKERSGDWLFDEMFSYD*
Ga0129333_1007775533300010354Freshwater To Marine Saline GradientMLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEDGERSGDWLFDEMFGG*
Ga0129333_1022814553300010354Freshwater To Marine Saline GradientMLWQDRNGNWFMTKSALDMKIEKAIIEANANKVWEEKERSGDWLFDEMFGG*
Ga0129333_1024905033300010354Freshwater To Marine Saline GradientMLWQDRNGNWFMTKSALDMKIEQAMIAENANKVWEEKERSGDWLFDEMFAVD*
Ga0129333_1107627133300010354Freshwater To Marine Saline GradientLKQTTMLWQDSRGNWNSTKSALDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG*
Ga0129333_1126106623300010354Freshwater To Marine Saline GradientMLWQDRNGNWFSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0129333_1174434923300010354Freshwater To Marine Saline GradientMLWQDRKGNWHSTQSPIDAKIEQAMIAVNAEKVWTEKERSGDALFDEMFGG*
Ga0129333_1176291513300010354Freshwater To Marine Saline GradientMLWQDRNGNWFMTKSPIDMKIEQAMIAENANKVWEEKERSGDWLFDEMFAVD*
Ga0129336_10008533133300010370Freshwater To Marine Saline GradientMLWQDRNGTWHSTQSPIDAKIEQAMIAVNAEKVWTEKERSGDALFDEMFGG*
Ga0129336_1043148413300010370Freshwater To Marine Saline GradientMLWQDRNGNWFSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFNEMFGG*
Ga0151620_1000197193300011268FreshwaterMLWQDRNGTWHSTVSAIDMKIERAMIAENANKVWEEKERSGDWLFEEMFGG*
Ga0151620_101353663300011268FreshwaterMLWQDRNGNWFSTKSTLDIKIERAMIEANANKVWEEKERSGDWLFDEMFGS*
Ga0119931_104955423300011984Drinking Water Treatment PlantMLWQDRNGTWYSTISPIDAKIERAMIEANAEKVWTEKERSGDALFDEMFGG*
Ga0163212_107112363300013087FreshwaterMLWQDRNDTWHSTQSPIDAKIEQAMIAAHADKVWTERELSG
Ga0163212_113098233300013087FreshwaterMLWQDRNGTWHSTQSPIDAKIEQAMIAAHADKVWTERELSGDALFDELFGG*
Ga0163212_119926333300013087FreshwaterMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERELSGDALFDELFGG*
(restricted) Ga0172367_1073220913300013126FreshwaterMLWQDRNGTTFSTISPIDAKIQRAMWEARIAENAEKVWTERELSGDALFDEMFGG*
Ga0177922_1017503843300013372FreshwaterMLWQDRNGNWFSTHSMTDIKIEQAIIEANANKVWEEGERSGDWLFDELFGG*
Ga0169931_10000808733300017788FreshwaterMLWQDRNGTTFSTISPIDAKIQRAMWEARIAENAEKVWTERELSGDALFDEMFGG
Ga0194113_10002394423300020074Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERELSGDALFDELFGG
Ga0194113_1006276283300020074Freshwater LakeMLWQDRNGNWFSTQSPIDAKIEQAMIAANANKVWEERERSGDALFDELFGG
Ga0194113_10067180103300020074Freshwater LakeMLWQDRNGTWHSTVSPIDIKIEQAMIAENANKVWEEKERSGDWLFDEMFGG
Ga0194113_1009571113300020074Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERERSG
Ga0194113_1015291083300020074Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWAERELSGDALFDELFGG
Ga0194113_1022661913300020074Freshwater LakeTNESMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERELSGDALFDELFGG
Ga0194113_1046979623300020074Freshwater LakeMSTQPNHKIMLWQDRNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFGG
Ga0194113_1064467733300020074Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERELSGDALFDELFGGXIMRRVTVKPKSSK
Ga0194113_1072332933300020074Freshwater LakeTWHSTQSPIDAKIEQAMIAANAEKVWTERELSGDALFDELFGG
Ga0194113_1081552513300020074Freshwater LakeMLWQDRNDTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFGG
Ga0194111_1028281033300020083Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQSMIAANAEKVWTERELSGDALFDELFGG
Ga0194110_1012519063300020084Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIAANANKVWEERERSGDALFDELFGG
Ga0194112_1002737673300020109Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERERSGDALFDELFGG
Ga0211736_10070449133300020151FreshwaterMLWQDRNGNWFSTVSPIDIKIERAMIEANANKVWEEGERSGEWLFAEMFGGD
Ga0211736_1089787353300020151FreshwaterMLWQDRNGNWFSTVSPIDIKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0211733_1039895853300020160FreshwaterMLWQDRNGNWFSTKSALDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0211726_1100399823300020161FreshwaterMLWQDRNGNWFSTQSPIDAKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0211729_1022402733300020172FreshwaterMLWQDRNGNWFSTKSTLDIKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0211729_1132690113300020172FreshwaterNGNWFSTKSALDMKIERAMIEANANKVWEEGERSGEWLFAEMFGGD
Ga0211729_1141081023300020172FreshwaterMLWQDRNGNWFSTVSPIDIKIEQAMIAENANKVWEEKERSGDWLFDEMFGGXLTVHQHAQIDL
Ga0194134_1003365663300020179Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFGG
Ga0194134_1010012723300020179Freshwater LakeMLWQDRRGDWHSTQSPVDAKIEEALIRAQFNKVWTERERSGDALFDELFGG
Ga0194115_1047702913300020183Freshwater LakeMLWQDRNGTWYSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFGG
Ga0194118_1005874973300020190Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWTERERSGDALF
Ga0194128_1039728913300020197Freshwater LakeNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFGG
Ga0194128_1049373443300020197Freshwater LakeWHSTQSPIDAKIEQAMIADNAEKVWAERELSGDALFDELFGG
Ga0194121_1003799913300020200Freshwater LakeNRPMLWQDRNGTWHSTQSPIDAKIEQSMIAANAEKVWTERELSGDALFDELFGG
Ga0194121_1039078943300020200Freshwater LakeTNRPMLWQDRNGTWHSTQSPIDAKIEQAMIADNAEKVWAERELSGDALFDELFGG
Ga0194119_1068678433300020220Freshwater LakePHRPESCILKESKKSKQMLWQDRNGTWHSTQSPIDAKIEQAMIAANANKVWEERERSGDALFDELFGG
Ga0208465_100037243300020570FreshwaterMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG
Ga0194133_1025087713300021091Freshwater LakeILKESKKSKQMLWQDRNGNWFSTQSPIDAKIEQAMIAANANKVWEERERSGDALFDELFG
Ga0194133_1047027243300021091Freshwater LakeRNGTWHSTQSPIDAKIEQAMIAANAEKVWTERELSGDALFDELFGG
Ga0194123_10040295113300021093Freshwater LakeMLWQDRNDTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDEL
Ga0194123_1019432743300021093Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDELFG
Ga0210295_101362033300021323EstuarineMLWQDRNGNWFMTKSAIDMKIEQAMIAENANKVWEEKERSGDWLFDEMFGG
Ga0194117_1003205143300021424Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIAANAEKVWTERELSGDALFDELFGG
Ga0194117_1025420833300021424Freshwater LakeMLWQDRNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGD
Ga0213866_1051771113300021425SeawaterMLWQDRNGTWHSTVSPIDIKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG
Ga0222715_1026174833300021960Estuarine WaterISTTLNTMLWQDRNGTWYSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0222715_1058535713300021960Estuarine WaterMLWQDRNGNWFSTKSTLDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0222714_10007828343300021961Estuarine WaterMLWQDRNGTWYSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0222714_1007120423300021961Estuarine WaterMLWQDRNGTWYSTVSPIDMKIERAMIEANANKVYEEKERSGDWLFNEMFGG
Ga0222714_1009071933300021961Estuarine WaterMLWQDRNGTWYSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFDEMFSYD
Ga0222714_1014892623300021961Estuarine WaterMLWQDRNGNWFMTKSAIDMKIEQAMIIENANKVWEEKERSGDWLFDEMFGG
Ga0222714_1021741833300021961Estuarine WaterMLWQDRNGNWFSTKSTLDIKIERAMIEANANKVWEEKERSGDWLFDEMFGS
Ga0222713_1008043833300021962Estuarine WaterMLWQDRNGNWFMTKSAIDVKIEQAMIIENANKVWEEKERSGDWLFDEMFGG
Ga0222713_1022138713300021962Estuarine WaterMLWQDRNGNWFSTKSTLDIKIERAMIAENANKVWEEGERSGEWLFAEMFGGD
Ga0222712_10007524163300021963Estuarine WaterMLWQDRNGTWHSTVSAIDMKIERAMIAENANKVWEEKERSGDWLFEEMFGG
Ga0222712_1002937533300021963Estuarine WaterMLWQDRNGTWFMTKSALDMKIEQAMIEANANKVWEEGERSGEWLFAEMFGGD
Ga0222712_1052242223300021963Estuarine WaterMLWQDRNGTWYSTKSALDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0222719_1001649223300021964Estuarine WaterMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKELSGDWLFDEMFGG
Ga0222719_1044213333300021964Estuarine WaterTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLFDEMFGG
Ga0196905_111012233300022198AqueousMLWQDRNGNWFSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGGD
Ga0255147_1000012513300024289FreshwaterMLWQDRNGNWFSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0208048_109129133300025283FreshwaterMLWQDRNDTWHSTQSPIDAKIEQAMIAAHADKVWTERELSGDALFDELFGG
Ga0208546_1000826183300025585AqueousMLWQDRNGNWFSTVSPIDIKIEKAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0208161_110797813300025646AqueousMLWQDRNGTWHSTVSPIDMKIEQAMIQARFDKEWTEKERSGDWLF
Ga0208784_1001300203300025732AqueousMLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEEKERSGDLLFDELFGG
Ga0208644_130841013300025889AqueousWQDRNGTWHSTVSTIDMKIEKAMIEANANKVWEEKERSGDSLFDELFGG
Ga0209972_1028256413300027793Freshwater LakeMLWQDRNGTWHSTISPIDIKVQEAMIQANANRVWEEKELSGDALFEEFYGG
Ga0119944_100507083300029930AquaticMLWQDRNGTWHSTQSPIDAKIEQAMIAANADKVWTERELSGDALFDEMFGG
Ga0119944_103022423300029930AquaticMLWQDRNGNWFSTQSPIDAKIEQAMIAAQFEKVWTEKERSGDALFDELFGG
Ga0315901_1110124823300031963FreshwaterMLWQDRNGTWHSTVSPIDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0334996_0007237_6617_67753300033994FreshwaterMLWQDRNGNWFMTKSALDMKIEQAMIAENANKVWEEKERSGDWLFDEMFAVD
Ga0334997_0822296_31_1863300034280FreshwaterMLWQDRNGNWFMTKSALDMKIEQAMIAENANKVWEEGERSGDWLFDEMFGG


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