Scaffold Ga0214919_10000994

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000994
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47901
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (78.05%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Associated Families: 17

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001562	Metagenome / Metatranscriptome	670	Y
F005586	Metagenome / Metatranscriptome	395	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007263	Metagenome / Metatranscriptome	354	Y
F010085	Metagenome / Metatranscriptome	308	Y
F030758	Metagenome / Metatranscriptome	184	Y
F037095	Metagenome / Metatranscriptome	168	Y
F045755	Metagenome / Metatranscriptome	152	N
F050377	Metagenome / Metatranscriptome	145	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000099412	F000868	GAGG	MSDPHGIIDPYRKGGSMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
Ga0214919_1000099416	F001043	GAGG	MSDYKDGFQDGYKFAREEIMEKLSEIDINDIDSWILDRFSEMIEGGVL
Ga0214919_1000099417	F000311	GAG	MYFELTAPDRLSLEMAYWDAQIIGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDREATGYRG
Ga0214919_1000099423	F005741	AGG	MNNRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLNKFYGQVNAYVFDTVKNKKITAMFLDEQIVTQVNSR
Ga0214919_1000099430	F045755	AGGAG	MSEIAGMWICSNCDTLAVVSVLTDTIAIQQCKCVTDERETNV
Ga0214919_1000099431	F000447	GAG	MGYIEIFRINENGAGWVDLSEATPDELFQIEIGLLNEGAFE
Ga0214919_1000099432	F007263	AGG	MINTYIDENEFYFIKDEIKICCDEQQFIYVCKAHGEQQGCYFCEFDYSNECECEN
Ga0214919_1000099435	F001562	GGCGG	MKSQFELDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE
Ga0214919_1000099437	F085708	AGAAG	MTTNRILTTLVQIALLVPALYMARLMWREIVSDFREWDKSH
Ga0214919_100009944	F050377	AGGA	MSTPTTTREYLKTQGITVGQRGRFSAAAKNVIKEAVAKGVTFTDSKNVK
Ga0214919_1000099450	F010085	AGGGGG	MKIQYVSKYISLSEEGLVPRIYCPMDQGSLLSNLDEEDGIFLYCLSCGYKKHIGLHFYDKLKEQVDNAIR
Ga0214919_1000099453	F037095	GGAG	MAKSADLNKDGKVTMTEEILAALGTYARAFLSAAIALYMTGNTSPRDLLMGGCAAVAPVILKALSPTNKEFGFKATK
Ga0214919_100009946	F000441	AGGAGG	MKMSDAYLNAQLDTAQKLLWGGSETENIEAHNIISKLIYDRIEQTE
Ga0214919_1000099460	F030758	GGA	MATVNKNFKIKNGLNVAGTATFDSSVILGETPLRFDTVTNKLQIQLNGTWQPIAFTSEIPDATQDISFMDIGLSIDYNGQPTYIVQANGVTPSGTSKFVNGGSPSDTSFSMVFDSGALA
Ga0214919_1000099478	F001106	AGGAG	MSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALSEEGVSWNVYQSTVQAIEKDTEEIEILPKFDSKAQPENTVLVRMTRDNARYDINRSTFTKQHPFVAMPEEDAQKIFDSEEGFRLATPKEVQDFYS
Ga0214919_100009948	F001019	GAGG	MTYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0214919_1000099482	F005586	GGCGG	MVNYKLDAMFEIRKFLWNKIQAAGIFDTEDYYSDSLNEVVVPILPVQQVPEMNQFLSGKKHMIYDKIGISYENNWMICCEQILFTIYSTDLIDIVEIRNFMTDEFRRMDDSARDINDWAGLSD