NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10026028

Scaffold Ga0214921_10026028


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10026028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5952
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F008814Metagenome / Metatranscriptome327Y
F012975Metagenome / Metatranscriptome275Y
F014017Metagenome / Metatranscriptome266Y
F014140Metagenome / Metatranscriptome265Y
F016396Metagenome / Metatranscriptome247Y
F073544Metagenome / Metatranscriptome120Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002602812F016396GAGGMRKSERLRLLEMQVVRLEMMVELYTQTLTNLLESQGLQSPSQLDAGKWYKAKLDKLDNE
Ga0214921_1002602813F008814AGTAGMDNKLTVLEEIIKEIGEELYQKWYNGLAIEDRTEETSKAMSTNAGETAVWVIQTFMNKFNAAAEELKPNDSN
Ga0214921_1002602817F014017N/AMDKLTEYLHENHRKKIADEIRYLELPPEWRPSEVIRYIVRIIEKNNG
Ga0214921_100260282F014140N/AMNTYKVKLDVELEVTAFNETDARDYVGDIFNIDDEIKKVNIIKITEKNK
Ga0214921_100260284F012975GGAMLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNLKGIFRKDQWGVTERIAVNEQGIWKLPTKYVKHFK
Ga0214921_100260287F073544AGGGGGVREYYEIIKIVLIHAERTYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHVEESN
Ga0214921_100260288F000671GAGGMEKILCYSCNKTKNKLNVRKSILIPINLLMCETCISSKFEPRWVVILAGRQLGSDAVKEFIIKKKYLGNEIAASELLV
Ga0214921_100260289F077310N/AMTLDANSVIIVIIASILSGMGTALVSGIKESKREKARLVEREQDLLKMDLKDLEIKLYKLEKDLSEWRDKYYSALQELIEVKAELEETLIKLTHIGLHE
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