Scaffold Ga0214921_10013012

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10013012
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9840
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F035651	Metagenome	171	Y
F037113	Metagenome / Metatranscriptome	168	Y
F037608	Metagenome / Metatranscriptome	167	Y
F068601	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001301210	F037608	AGGAGG	MSNVIAFHPRKSDLVLLYEVVGEDGKAEWGGNSEADALAWVASSPTATRILVSGWESDEEDAHLVGQPLDITAIVREASR
Ga0214921_1001301212	F037113	AGAAG	MSKWTVWVGGSEINWQHYTHRIDAERIAEFWRKVKGYDDVVVEEVA
Ga0214921_1001301215	F035651	GAG	MSHYDGDSWSNHVLNEVKCAECEEYFDDQEGEGNICPACIEKGESK
Ga0214921_100130122	F003784	GGA	MATDDTDFAYYGLSHLGDEYRRRNDNHKPNENPLSDHPAVVGYRAVGVSTEDLTSFIESFASLRAGRVKNVGHSQYSLAQGQKFESFTPADTIRELIEELADASNYIDFLAIKLLNLQHTMDLVLPDCD
Ga0214921_100130128	F068601	GGA	MKIEESQENIVVLSDIREGKLRALSPYGPVKAGLTTLPKINEEVRLMELLNSLESVVHDLNYKSFTVYDTLNTAIEGARAALSAGTQDTTGTDETP