Scaffold Ga0214921_10010146

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10010146
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11721
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F041639	Metagenome	159	N
F043284	Metagenome	156	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001014611	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTIALASDAGEIIAVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPCLMRQTYLRIGILPDPITISEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALREQFLAEAEPIVKAYNDLRGAA
Ga0214921_1001014612	F041639	N/A	MGRRPNTAILAQAAATGVGLRQARRQLEKKQGVPNAKPMKPIAGIGLDGEIDRLESLAATLGEAAKEASGSERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL
Ga0214921_100101462	F016963	GGAGG	MIEVLPDETTHDQLLNRVRSLARELAEAKAALAASEARENDLIDRIRSGL
Ga0214921_100101463	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVMK
Ga0214921_100101465	F020510	AGGCGG	VSLQDLLIMFSARVIGTYTPEQYADCVREARANRMRWGMGQW
Ga0214921_100101466	F081048	GGA	VVSVKRLTWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQTYQKRDLEKKK
Ga0214921_100101468	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDEEAVIEYVIKKALKGFAKK