Scaffold Ga0214921_10002785

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10002785
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27791
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (66.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F024787	Metagenome	204	N
F026555	Metagenome	197	N
F026865	Metagenome / Metatranscriptome	196	N
F036148	Metagenome	170	N
F045093	Metagenome	153	N
F081333	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1000278514	F036148	N/A	MATKKPRKAPQRRRRAPRKAEALNKLENHYITLNEIFKAAKAAGFSHDVAFWLITEPGASMPDWINPGNQPTEIIPRIDPTEDEDED
Ga0214921_1000278519	F024787	AGGA	MNYEIYGWLVTITLFTLVALLIGVTWIVAVENGYDKGFKSGYKRGTADTKQTNVKVDKFTVRTHPSMRQKMLEADNEYLMEKVVSLWDRENK
Ga0214921_1000278521	F009887	GGA	MGDMEMIDAHGVKATFTDNGVELDIVPLSECCEVCNDPRMLNINGVRKCAGCGCINHIDYKNDQI
Ga0214921_1000278522	F026555	N/A	MREGHGYNLYVADLLQHFGVPQVDVPDFTIATTHDEIRDKTLNEKDVIVGDLVLEVKSSSRSFTNADDFPFNPVIIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTSTKYDWTIEKYYDGYRKIEERFYLVKKRHCRPFIEMVDVLLERANERTNQM
Ga0214921_1000278527	F045093	AGG	METQNARQLKIVASGKPKKKLGRHTTAMVKAITGRTDIDTVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE
Ga0214921_1000278529	F081333	AGGAG	MKYIPSVLQVIGSLVIVAGVATFNPVVAVILSGVFLVLFGIALENRGK
Ga0214921_1000278537	F011143	AGGTGG	MHKIEIVKKDGKKITYDLTPSVKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFGDDYINQYLDIDLLYDSKNG
Ga0214921_1000278538	F026865	N/A	VAVATGISPKDLLEVDPAIYSAIKAILQERHFNNKKATVRRK
Ga0214921_1000278539	F020143	AGGCGG	MIKPRYSELPGRTRSLAAVPSIYVENLTELLEKMKKVDPDLQKEFRKELSKAVKPVAKLAQSFVPHSPFPGWRDVEPNYPPQWGWANDNVHRGRTIGDNKKSRWKWSQTEVIRGIRVSTAKSKVQRVKGTTFSVTALAIVNKSVPGIIYELAGFGSSRSRGRTRRVSRNSNASESFIGKLQGTANSGAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG