NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10001139

Scaffold Ga0214921_10001139


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10001139 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46199
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (76.92%)
Novel Protein Genes25 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Associated Families25

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F000671Metagenome / Metatranscriptome945Y
F001019Metagenome / Metatranscriptome804Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F001781Metagenome / Metatranscriptome635Y
F002489Metagenome / Metatranscriptome554Y
F003603Metagenome / Metatranscriptome477Y
F005177Metagenome / Metatranscriptome409Y
F006744Metagenome / Metatranscriptome365Y
F007470Metagenome / Metatranscriptome350Y
F010248Metagenome / Metatranscriptome306Y
F017101Metagenome / Metatranscriptome242Y
F017995Metagenome / Metatranscriptome237Y
F020171Metagenome / Metatranscriptome225Y
F021481Metagenome / Metatranscriptome218Y
F024549Metagenome / Metatranscriptome205Y
F028150Metagenome / Metatranscriptome192Y
F034924Metagenome / Metatranscriptome173Y
F043387Metagenome / Metatranscriptome156Y
F047650Metagenome / Metatranscriptome149Y
F049621Metagenome / Metatranscriptome146Y
F051117Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1000113916F002489GGCGGMTENEKPQNLEDNLPMVNYIMLHRIYDLLTLIANKMVGPEDVSKMVEYHNQGYLLGPAPSFTPSEQEKDNA
Ga0214921_1000113924F043387GAGGMMTKWDTIQADIADAYVYLDEEEALDKINAEAISDSDIVSLDEIIEKELTLDWEDSE
Ga0214921_1000113927F000447AGGMGYIEIFRLDNEGAGWVDLSEATPDELFNIEIGLLNEGAL
Ga0214921_1000113928F006744AGGGGGMNLDEFKAHVQATRQASKAEALSVLSATITIQPNERENLK
Ga0214921_1000113929F017995GGAMSKMKEYIEIIAANCDECGGAGFLFFGNENNYDVEPCDCIADLSDELNVDWVNK
Ga0214921_1000113930F024549N/AMYRLDTYYDGKLEYTFQFADALQAFEAFSKCYDVGFANELATYNLSMPNGKMYTKNFNRIGLVSQK
Ga0214921_1000113934F049621GAGMADLKFYNSLMLLITGDESEKKAAKEYLAEVDPDIWGQEE
Ga0214921_1000113940F021481AGGAMSPILDTAKGRFYRLGDTFTTGKSGVTGAISEIISIRPNLTKLRLDTGSGIRYAMVKIGK
Ga0214921_1000113941F005177AGGAMKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRRFNGTIRAYVYDNLKKKKTTALLLPTEFIPKKTKLTKLLG
Ga0214921_1000113946F007470AGGAGMDYKDGFEDGVKFAREVIILNLRSWAETTADDGQVMDDIADRLEFGTVDYDL
Ga0214921_1000113947F047650GGAMTSEDLNLIYYCDACSVARASHLIKLLDGDLAFCGHHYNKYKEALDKKAYEVIELNKTEEAIPILEKAE
Ga0214921_1000113948F000450AGGCGGMGDRANFGFVQPNGHTIVLYGHWAGHNMLANLAEAVFKARPRWNDPSYATRIAISQMVADDWNSETGWGLSVNQINDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMSNDAIFTMDLSNFVEKYADAVVSV
Ga0214921_1000113950F020171AGGCGGMAELFIDTVAEHITGAMQQEIGEELFDQWSNKNCDEGPEYAEYEFMQYASPELKQQYNVYYGYTEKDEYYLC
Ga0214921_1000113954F001781AGGAGMKAEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNIMEDETYKVKVTQDQMWDNLCEAVQAGQGFSLEYGAEQHQEEVQDWMLSRDYIVDTMFEDDEEDEDATD
Ga0214921_1000113955F000441AGGAGGMQQTDNHINTELSKAQALLWSGSLHEVDEAHNIISNLIKDRMGKAEGTNV
Ga0214921_1000113956F001019GAGGMSDYVPSLEILEVNYSCSPGGIDMFEVYDKSNIPLDIPIYETESLTEAVLFCYNLGKDFTVRTYAEWEERESLYASV
Ga0214921_1000113957F034924N/AMLNGKKGNPYMPLYRVFGTKFTNYYTIVSATDEYQAAELANARPLIEWDEIPTDDVVEATDVFLDEDTLINLEGGL
Ga0214921_1000113959F003603AGGCGGMKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRIMEVVAWVIEKQARRYDREVETGGQVSEGLAIAHKLDTVIDKIKISNDFKNINLPITPKERAEFIKSLPKEQEKSYRYSWLHETNNQSNIVQATI
Ga0214921_1000113961F051117GGAGGMTHPLCINYGCDFQLDLDGQVTCIVCRSMGDDMPNPQPDLNQSGYGYDELKDFDMGYKDSPRSRITPFRGPIK
Ga0214921_1000113966F001176N/AMSENGTGMATPPNNQPSGAVTSQEAARKKPTQGKFRSGITTPRPPTKIDTNKHGIRRETVLGQKKTGRPKKD
Ga0214921_1000113967F001280GGCGGMCVECGCESLGSETGISNIPGGILDVSRDGEAGLTLNMTSTPEQTRQFINE
Ga0214921_1000113975F017101GGAMTVLESIIQDVGTALFQKWANALPQDQSTEESLAALNKNATESTYFVVKMFMDKFNEAADQLKAQPEEK
Ga0214921_1000113977F010248GGAMRKSERIRLLEMEMLRMQFQIEYLSRAIDILLQENKLKGPDLDAGKWYTAKLNKDN
Ga0214921_1000113981F000671GAGGMEKILCYSCNKSKNKLEAKKSFLLPINLLICETCISAKLEPRWVIILSGRSNGSDHVKEYIVKRRYIGNEITASELLV
Ga0214921_1000113990F028150N/ALAQHTEGRYNMNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVALWFLTIGIRERSDKE
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