Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10000295 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10000295 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	98310
Total Scaffold Genes	146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	106 (72.60%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

98310

Total Scaffold Genes

146 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

106 (72.60%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010766	Metagenome / Metatranscriptome	299	Y
F023106	Metagenome / Metatranscriptome	211	Y
F030091	Metagenome / Metatranscriptome	186	Y
F030765	Metagenome	184	Y
F043941	Metagenome	155	Y
F063708	Metagenome	129	Y
F102563	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_10000295105	F030765	AGGA	MNEAEFDQEFDVEDITNAIVNQAKADVKSKFGNKKRHRQ
Ga0214921_10000295133	F023106	GGA	MRVSRRTTEEEKVAMKLGNMVSDLRVDLELVGEYLAKSQPHVVYNRLQVIAESAKETKEGTNYAYNNL
Ga0214921_10000295139	F063708	N/A	MDLETFKQYLNLHLISLEQDLEENPASIHVVDIEGQIYAVKHLIEVINE
Ga0214921_1000029534	F030091	AGTAG	MSKKSANTYDSYHHKTIKRFYLDGIIYDDSMIGRLKDEYIRLLVSEMKLSGYVPRIDLDPDFTIGYNEIKNFFEFELSIQAVYAGKRKSEWIAGIDGTTPIFIPQNKSSESLQDRVLP
Ga0214921_1000029539	F043941	AGG	MASFTVYYGKFTCHECKTEVKSLRLYAETKTATWMCANKHLSSVKFGKQKWKGNDREE
Ga0214921_1000029559	F102563	AGGAG	MLNTNGTAIQSNRPHKFFERYLDNDLDELAKFLEVKYQLIKDAQLRGVSTMENDEGVWLESGSLSTVKWREYNVFQLYHPSLHKLYSELSSTVKEACLYYGVDFEKQQYYVQGWFNINESGNGKLNWHDHGAPGAPNFHGYYCVKAEPSTTYYRLFGDPNREVANHNIDNRMIVSEMGHPHAQGDWDWPGSRITVAYDIQPLKSLLNAGRHTIEQHWIPLL
Ga0214921_1000029565	F010766	AGG	MRIKIIRFVVKALGYEWSGDELKLPIWYVKEKKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10000295

Overview

Ecosystem & Geography

Associated Families

Sequences