Scaffold Ga0224557_1000077

Overview

Basic Information

• Taxon OID: 3300023101
• Scaffold ID: Ga0224557_1000077
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107404
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (82.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024662	Metagenome / Metatranscriptome	205	Y
F047790	Metagenome / Metatranscriptome	149	Y
F066084	Metagenome / Metatranscriptome	127	Y
F097724	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224557_100007762	F024662	GGA	MREFGLMLGALPPVARKALAGALILLDQGARLYPPARGRRFARLDDEVAEAYVRALLARHDAAAEMTQRLKGVVTMCYYDLPEVQREIGYDPGPYIAAVSRRRLQAYGPQIRAGEAAVTAGEAAVTAGPSDPGPGQS
Ga0224557_100007766	F066084	AGGAGG	MAGPEAYVLASGGTTLERSREEVLEATRPLPPDEDVVIEELSDDEDRLFLAVILDS
Ga0224557_100007768	F097724	GAGG	MVRKALFLLPVFVAVLAASQWRELSRYVKLRQMSSGDGHPEHVPVEGHHSYPTSPGGGAADGTGDFDSGSRGGPQTP
Ga0224557_100007786	F047790	GGAG	MSLDDDLAAWAATVRLRDDEAAVIFQRLVRTPAPVPVAKSRLDSSWWRDFNADFAARLIASTRPARRAA