NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006409

Scaffold Ga0214917_10006409


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12214
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015973Metagenome / Metatranscriptome250Y
F018914Metagenome232N
F066571Metagenome126N
F068576Metagenome124N
F097213Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000640916F018914AGGAGGMAKQDKFAVLKKWVAESQTLMGLDHWEVTIVEAAADVDAWADIEPHPQQPTADLRVAFDFWKQEPEKQRLILTHELLHLVLARYARISENLEESLGKLAWAVIEPQLEDGEERTIEHLARIIAPYLSLPAFPKV
Ga0214917_1000640917F066571AGGMRYDSWATARPYGVLPSLALPVVSSHRQGLTWGSVDARTTIMAIAGQRGTSGATPLLLHHYRRANG
Ga0214917_1000640918F068576N/AEGSEKAVDKQEQSHRPKSSRVLSTRAARQRRTASDNRGVPIEQRDFQQACAAWSLKLGVKLNALFNLMPQYGKSIHWARERYYGGTFVTDADLYWVKSRIDDQPDHSISAKMQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRVTK
Ga0214917_100064094F015973GGAGGVSIAASTVTITTSPTLIATGLNGASWVYLHAPTGANTVYIGPSNVTTATGLELPKGALQTFWLAETDKLYGIVATSTQSLMTMQTGGR
Ga0214917_100064099F097213GGAMISNLLEVVGAALVIAGVALLSLPLGLIALGAALAAIGYTLGDRK
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Institute for Fundamental Biomedical Research
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