NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10003192

Scaffold Ga0214917_10003192


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10003192 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19200
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014841Metagenome / Metatranscriptome259Y
F035280Metagenome172Y
F054812Metagenome / Metatranscriptome139Y
F072277Metagenome121Y
F099272Metagenome103Y
F105048Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000319214F072277AGGAGGMEKCVKCGVFMEKMEVFPKGVCLKCYAVEFEKEFQSALKVARLK
Ga0214917_100031922F014841N/AMGNEQQKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDK
Ga0214917_1000319225F054812AGGAGMNEQEVNQKFDALIQPKVINQVVKQKREPAKFPELRYLWGITLLGSFILIVLSAVFTTIIEAL
Ga0214917_1000319238F035280AGGMEKKIGRYWLAWGRRLGFGIGFSISSYGIDLDLGFWFIGVEF
Ga0214917_100031925F105048GGAMILLSWLRDNKPLRVSEGSLRAIRRAQLDKTLSEEADKRQARKKAREFKLNS
Ga0214917_100031927F099272GAGGMKCYTCGSEFRITFVKGKPYCFLCEVDASMEQYGLVRPIKERTA

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