Scaffold Ga0214917_10003192

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10003192
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19200
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014841	Metagenome / Metatranscriptome	259	Y
F035280	Metagenome	172	Y
F054812	Metagenome / Metatranscriptome	139	Y
F072277	Metagenome	121	Y
F099272	Metagenome	103	Y
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000319214	F072277	AGGAGG	MEKCVKCGVFMEKMEVFPKGVCLKCYAVEFEKEFQSALKVARLK
Ga0214917_100031922	F014841	N/A	MGNEQQKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDK
Ga0214917_1000319225	F054812	AGGAG	MNEQEVNQKFDALIQPKVINQVVKQKREPAKFPELRYLWGITLLGSFILIVLSAVFTTIIEAL
Ga0214917_1000319238	F035280	AGG	MEKKIGRYWLAWGRRLGFGIGFSISSYGIDLDLGFWFIGVEF
Ga0214917_100031925	F105048	GGA	MILLSWLRDNKPLRVSEGSLRAIRRAQLDKTLSEEADKRQARKKAREFKLNS
Ga0214917_100031927	F099272	GAGG	MKCYTCGSEFRITFVKGKPYCFLCEVDASMEQYGLVRPIKERTA