Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10003192 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19200 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (85.71%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014841 | Metagenome / Metatranscriptome | 259 | Y |
F035280 | Metagenome | 172 | Y |
F054812 | Metagenome / Metatranscriptome | 139 | Y |
F072277 | Metagenome | 121 | Y |
F099272 | Metagenome | 103 | Y |
F105048 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000319214 | F072277 | AGGAGG | MEKCVKCGVFMEKMEVFPKGVCLKCYAVEFEKEFQSALKVARLK |
Ga0214917_100031922 | F014841 | N/A | MGNEQQKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDK |
Ga0214917_1000319225 | F054812 | AGGAG | MNEQEVNQKFDALIQPKVINQVVKQKREPAKFPELRYLWGITLLGSFILIVLSAVFTTIIEAL |
Ga0214917_1000319238 | F035280 | AGG | MEKKIGRYWLAWGRRLGFGIGFSISSYGIDLDLGFWFIGVEF |
Ga0214917_100031925 | F105048 | GGA | MILLSWLRDNKPLRVSEGSLRAIRRAQLDKTLSEEADKRQARKKAREFKLNS |
Ga0214917_100031927 | F099272 | GAGG | MKCYTCGSEFRITFVKGKPYCFLCEVDASMEQYGLVRPIKERTA |
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