Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10000649 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10000649 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45158
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (75.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45158

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (75.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F013888	Metagenome / Metatranscriptome	267	Y
F038675	Metagenome / Metatranscriptome	165	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000064910	F000258	GGAG	MTANFKLDAMLEIRKFLWAELLKAKIFDEDDYYSDNVGSAIIPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQILFTVYSTDVSEINEIRNFMTDLFRRMDGSARDVNRFQSLSNKFKFHSIFIADISPTEPSEEIQGFLSTDIILEVKYSRITDRIGRFL
Ga0214917_1000064913	F003408	AGAAG	MPELIQTFKAMQKTEDEKRKFLASLQGVNLNDEQEKEGPTFDDIRRRALGVKASGDDVLSLQGSFASEAGFGINAGLGYSKE
Ga0214917_1000064930	F001464	N/A	MVRKKRSRVRKKFLYFFLNNKLHKVIRLSRAKNEIVAWCYPDKKRVMYSYSDAEKNMETAYTIKQVGQILGRHKVTIEEYILQGKIQKPQRVYPISNPSSRWSKFMLSESDILKLHEYILEAGYTKNIPSKTELRALLKNNIILYTKTDSGFVPVWKAE
Ga0214917_1000064943	F071247	GGAGG	MGSNNKIPFNKTIIKNGRIIRIRKDGSIKADLGPYKVKKDK
Ga0214917_1000064948	F038675	N/A	MKLYQSKDWLYRRYIVQKKTVTEIAIECSVSAMTIQRYLDQFGLIKRR
Ga0214917_1000064950	F013888	GGA	MSVIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFIVGEYNDTVLIGMPDTYILNAPGNIYRPLFKDNTADLILGIWECGEVLKGRVGQVLVSQDKVIGSEDKVDNCDYPDMWGTMLFQKNMIRYIDTTLDHPGKQLKEWISRGSNIKAVRPGGQYMDIGTLRGLKQLYKEMDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10000649

Overview

Ecosystem & Geography

Associated Families

Sequences