Scaffold Ga0214917_10000005

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000005
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 250224
• Total Scaffold Genes: 335
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 175 (52.24%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F001246	Metagenome / Metatranscriptome	737	Y
F002226	Metagenome / Metatranscriptome	580	Y
F004169	Metagenome / Metatranscriptome	450	Y
F005089	Metagenome / Metatranscriptome	412	Y
F009329	Metagenome / Metatranscriptome	319	Y
F011752	Metagenome / Metatranscriptome	287	Y
F020890	Metagenome / Metatranscriptome	221	Y
F041726	Metagenome / Metatranscriptome	159	Y
F048809	Metagenome / Metatranscriptome	147	Y
F053086	Metagenome	141	Y
F057119	Metagenome / Metatranscriptome	136	Y
F067187	Metagenome / Metatranscriptome	126	N
F083877	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_10000005147	F009329	AGGAG	MTPYELRFEIFKQAYAHANDKFNIEYDTARCWNENSMNTVKMDYPQFPSYEYIEELANKINSFVSSK
Ga0214917_10000005153	F001246	GGAGG	MSALVAWCLANQALIATVLFAVSEALGANPKVKSNGILSLILLQAQAQLKKKGATDLTP
Ga0214917_10000005161	F000860	AGGCGG	MLPKILSQDSNYDEWCEQAILNAYQEAAECDEFMFGDYDYCKEWMSNNDYIEEQ
Ga0214917_10000005164	F011752	N/A	MNATTEDIVAHVREWSLDRAADMSIPKEDARAILAEFYEWIEPEGDELEIVSLDPES
Ga0214917_1000000518	F083877	GGAG	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNNTEHFKENYHIVKLIACLDGEIEKL
Ga0214917_10000005218	F053086	AGGAG	MAKSANKAKKGGAGSANNKKQNSGNANANKAKNGGKKK
Ga0214917_10000005271	F002226	GAG	MSLISQKDRQMVIEALEFYIEDMKKNNCNEAAIYSYNTLLNWIELEYFKNEN
Ga0214917_10000005290	F004169	N/A	MTEDDLKAVLAKYQQKAFELFNQNIVLETQVEQLNKTIADLQKKTKRNTKEEDFQ
Ga0214917_10000005308	F067187	AGAAG	MRYKETIRLVKKALDNPSLYSAEEIIYMKKALDNAILSLARKKYNKKKKGFGNYETN
Ga0214917_1000000537	F048809	GGA	MKKFIKWFISPSKKPIVETDDVYSKLIELEERIVALEQENIETSNCLYELMNAIDAVDARIDILTLEKWSGPDV
Ga0214917_1000000547	F057119	GGA	MTFLFGMGLGSLLTIGAAFIFAADRNILDEGDENYYN
Ga0214917_1000000552	F020890	N/A	MDSFDDLQIEEFSSFDFVEEMNEPLFEEEDNDKSFNAFLNSNFDF
Ga0214917_1000000564	F041726	N/A	MKNYRLLIEYWVPDEDENLYEEKFIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV
Ga0214917_1000000579	F005089	GGA	MNINDLLSSIALTEELAMENYQQRNGVVDYRLDGVCNHYFPKYTWSGLNDGEVCLTCKVSKTVKGQFRYTFQVDGKRIAEKMIVSEFLALGALR