Scaffold Ga0214478_106373

Overview

Basic Information

• Taxon OID: 3300022735
• Scaffold ID: Ga0214478_106373
• Source Dataset Name: Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.0257
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100378	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214478_1063731	F100378	N/A	MHMQIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTSESLSSVSLEKSGFSIVFKV
Ga0214478_1063732	F100378	N/A	MSDAYAKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV
Ga0214478_1063733	F100378	N/A	MSDAYEIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSVSLEKSGFSCL
Ga0214478_1063734	F100378	N/A	MSDAYAIVDIPKSLPIHGMALTSTDRKIEHSKVVLGTQTSESLCSVSLKKSRDSLVFKV
Ga0214478_1063735	F100378	N/A	MSDAYAIVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLEKSGFSRLQGVGVLL
Ga0214478_1063736	F100378	N/A	MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVIGAQTSESLSSVSLEKSGFSIVFKV