Scaffold Ga0212088_10012132

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10012132
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13228
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016642	Metagenome	245	N
F033624	Metagenome / Metatranscriptome	177	Y
F034036	Metagenome	175	N
F074312	Metagenome / Metatranscriptome	119	Y
F091214	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1001213211	F074312	GAG	MDIIKIIAKIESNKTTLPPEHKDAVWMEGFNHGLDWAIRILEGDKSAS
Ga0212088_1001213214	F091214	AGGAG	MKRKPWIKPKELSLEDLAWAMFEKITFLEAQEFAYELGYEIVIRWDK
Ga0212088_1001213216	F033624	N/A	MIEIKMSHGDLSFATIEAVARFNYNRAKGNEDPRGHAPTWVEQVAREISGCLGEIAIARWQDKYPFALFEERKMGDVGEFEVRTTAYATGKLLINSSDDPSRKYLLVTLPTHYLACIHGWMYGYEAQTEKFYNTTMRTPVFAVQQQYLNPPETIHG
Ga0212088_1001213219	F034036	N/A	MTTIAAIEGPDWVMIGADSQSSSEDGFSINIPNGKVFKNNNLVFAMAGSVRGINILEHDFVPPVVNGKDIDKYVTRQLIPSIRKSFLEAGYEFSKADSAVEHDNIIIVAVKGRVYCINEDYSWERNADNLYVAGSGEKFALGAMTALGGGVMIDDPIKARKILTKALQIASKYDSFTGGKITINLIQEDK
Ga0212088_1001213222	F016642	GGAG	LSKIIELSKDEVRICTNLATERWLTKFGSVDRPNYAEGKAAGRLEHELLANVRANISEWAAAKSYNQTWSVPWYPNELHPERKNLADVGNNYEIRTVRTRTAIPFWDKDINKIIIGTKILDEEYYSQVEVYGSFHPLECMLDKYRDETIMGWRVPVTELQYE