Metagenome / Metatranscriptome Family F074312

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F074312
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	48 residues
Representative Sequence	MDLEKAKAKIEAAKTSVPLDHKDFDWMEGFNAGLDWALRILTGDKSAS
Number of Associated Samples	89
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.23 %
% of genes near scaffold ends (potentially truncated)	1.68 %
% of genes from short scaffolds (< 2000 bps)	3.36 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (88.235 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (52.941 % of family members)
Environment Ontology (ENVO)	Unclassified (90.756 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (89.076 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.11% β-sheet: 0.00% Coil/Unstructured: 57.89%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF02945	Endonuclease_7	21.01
PF07659	DUF1599	13.45
PF02467	Whib	13.45
PF13481	AAA_25	4.20
PF13362	Toprim_3	4.20
PF08281	Sigma70_r4_2	3.36
PF08220	HTH_DeoR	3.36
PF04545	Sigma70_r4	2.52
PF12705	PDDEXK_1	2.52
PF13392	HNH_3	0.84
PF13252	DUF4043	0.84
PF13704	Glyco_tranf_2_4	0.84
PF03452	Anp1	0.84
PF01510	Amidase_2	0.84
PF01464	SLT	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
All Organisms	root	All Organisms	11.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Viruses	superkingdom	All Organisms → Viruses	10.92 %
cellular organisms	root	All Organisms → cellular organisms	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.68 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.84 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.04 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.68 %
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	0.84 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.84 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002091\|JGI24028J26656_1000795	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8506	Open in IMG/M
3300003375\|JGI26470J50227_1005242	Not Available	3635	Open in IMG/M
3300003815\|Ga0007856_1000218	All Organisms → cellular organisms → Bacteria	6781	Open in IMG/M
3300004448\|Ga0065861_1019574	All Organisms → Viruses → Predicted Viral	4496	Open in IMG/M
3300004460\|Ga0066222_1113934	All Organisms → Viruses → Predicted Viral	2925	Open in IMG/M
3300004685\|Ga0065177_1018101	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1320	Open in IMG/M
3300004770\|Ga0007804_1003459	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5177	Open in IMG/M
3300004807\|Ga0007809_10000081	Not Available	35672	Open in IMG/M
3300006071\|Ga0007876_1000088	Not Available	38989	Open in IMG/M
3300009154\|Ga0114963_10018504	All Organisms → Viruses → Predicted Viral	4651	Open in IMG/M
3300010885\|Ga0133913_10003536	Not Available	39231	Open in IMG/M
3300013286\|Ga0136641_1044278	All Organisms → Viruses → Predicted Viral	1307	Open in IMG/M
3300020716\|Ga0214207_1001093	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6817	Open in IMG/M
3300020727\|Ga0214246_1000059	Not Available	37036	Open in IMG/M
3300020733\|Ga0214172_1000125	Not Available	41958	Open in IMG/M
3300021138\|Ga0214164_1034564	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1230	Open in IMG/M
3300022555\|Ga0212088_10012132	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13228	Open in IMG/M
3300025338\|Ga0208501_100014	Not Available	6330	Open in IMG/M
3300025358\|Ga0208504_1000391	Not Available	11011	Open in IMG/M
3300025379\|Ga0208738_1000811	Not Available	7690	Open in IMG/M
3300025383\|Ga0208250_1000054	Not Available	41479	Open in IMG/M
3300025401\|Ga0207955_1007534	Not Available	2308	Open in IMG/M
3300025410\|Ga0208875_1003244	All Organisms → Viruses → Predicted Viral	3461	Open in IMG/M
3300027708\|Ga0209188_1013158	All Organisms → Viruses → Predicted Viral	4546	Open in IMG/M
3300027777\|Ga0209829_10000422	Not Available	39207	Open in IMG/M
3300029930\|Ga0119944_1015259	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	1095	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	96.64%
Marine	Environmental → Aquatic → Marine	3.36%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	80.67%
Lake	Environmental → Aquatic → Freshwater → Lake	14.29%
Coastal	Environmental → Aquatic → Marine → Coastal	3.36%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.84%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	57.14%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	15.13%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	14.29%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	7.56%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.36%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.84%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	52.94%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	15.13%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	7.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.04%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	4.20%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.20%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.20%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.36%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.84%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.84%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.84%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.84%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000203	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08	Environmental	Open in IMG/M
3300003812	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08	Environmental	Open in IMG/M
3300003815	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004685	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)	Environmental	Open in IMG/M
3300004687	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (version 2)	Environmental	Open in IMG/M
3300004691	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (version 2)	Environmental	Open in IMG/M
3300004770	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300006071	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09	Environmental	Open in IMG/M
3300006072	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09	Environmental	Open in IMG/M
3300006101	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09	Environmental	Open in IMG/M
3300006105	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006112	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08	Environmental	Open in IMG/M
3300006113	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08	Environmental	Open in IMG/M
3300006117	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09	Environmental	Open in IMG/M
3300006119	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07	Environmental	Open in IMG/M
3300006120	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08	Environmental	Open in IMG/M
3300006128	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013068	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES062 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013093	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300013285	Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y	Environmental	Open in IMG/M
3300013286	Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y	Environmental	Open in IMG/M
3300016684	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES068 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020686	Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion	Environmental	Open in IMG/M
3300020693	Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 hypolimnion	Environmental	Open in IMG/M
3300020716	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion	Environmental	Open in IMG/M
3300020727	Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion	Environmental	Open in IMG/M
3300020731	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion	Environmental	Open in IMG/M
3300020733	Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion	Environmental	Open in IMG/M
3300021123	Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300021130	Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnion	Environmental	Open in IMG/M
3300021131	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion	Environmental	Open in IMG/M
3300021134	Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion	Environmental	Open in IMG/M
3300021138	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300021139	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300022602	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion	Environmental	Open in IMG/M
3300025338	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE09Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025357	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025358	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025369	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025372	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025379	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025392	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025401	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025410	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 (SPAdes)	Environmental	Open in IMG/M
3300025411	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025413	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025421	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025426	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025429	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025467	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025598	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025773	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09 (SPAdes)	Environmental	Open in IMG/M
3300025785	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025838	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)	Environmental	Open in IMG/M
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027777	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300031884	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005	Environmental	Open in IMG/M
3300032117	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003	Environmental	Open in IMG/M
3300032665	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007	Environmental	Open in IMG/M
3300032676	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009E_0024607	3300000176	Freshwater	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILSGDKSAS*
TB18AUG2009E_0062053	3300000203	Freshwater	MDKYIEKIESAKTILEPQDKDFEWMDGFNHGLDWAIRILTGDKSAS*
TBL_comb48_EPIDRAFT_10529584	3300000439	Freshwater	MKAVMDITKIIAKIESNKTTLPLEHKDAVWMDGFNHGLDWAIRILEGDKSAS*
RCM26_12372942	3300001849	Marine Plankton	MATGLTSEELTKAKEKIENAKTTLPKEHKDYDWIDGFNHGLDWAIRILEKDKSAY
JGI24028J26656_100079517	3300002091	Lentic	MAEELARFIGKIESAKTSLPDNKDREWLDGFNHGLDWAVRILTGDKSAS*
JGI24028J26656_10116993	3300002091	Lentic	MMDKYIEKIESAKTILEPQDKDFEWMDGFNHGLDWAIRILSGDKSAS*
JGI24218J26658_10303072	3300002092	Lentic	MDIDKAKEKIESAKTSLPVGHKDTDWMEGFNAGLDWALRILNGDKSAS*
JGI24890J29729_10076424	3300002307	Lentic	MDIIKIIAKIESNXTTLPPEHKDAVWMEGFNHGLDWAIRILEGDKSAS*
JGI24890J29729_10266591	3300002307	Lentic	AKEKIESAKTSLPVGHKDTDWMEGFNAGLDWALRILTGDKSAS*
JGI26470J50227_10046862	3300003375	Freshwater	MSQDIAKARQKIEDAKTSVPLDHKDYEWMDGFNHGLDWAIRILDKDKSAS*
JGI26470J50227_10052426	3300003375	Freshwater	MTDEELAKAKEKIESAKTNVPKGRGDYDWIDGFNHGLDWALRILEKDKSAY*
JGI26470J50227_10104884	3300003375	Freshwater	MLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS*
JGI26470J50227_10595893	3300003375	Freshwater	MMSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS*
Ga0007850_10087082	3300003783	Freshwater	MDLEKAKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0007835_10008669	3300003789	Freshwater	MDLNKAMDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0007835_10038135	3300003789	Freshwater	MDLEKAKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGD
Ga0007835_10155722	3300003789	Freshwater	MDLNKAMDKIEAAXTSVPLESKDFDWMEGXNAGLDWALRILXGDKSAS*
Ga0007861_10007247	3300003812	Freshwater	MTDEELHKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY*
Ga0007861_10032493	3300003812	Freshwater	MKAVMDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILEGDKSAS*
Ga0007856_100021817	3300003815	Freshwater	MDLEKAKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSA
Ga0065861_101957410	3300004448	Marine	LDKIKQKIEEAKTYLADDHKDKEWMDGFNAGLDWALRIINGDKSAS*
Ga0065861_11239072	3300004448	Marine	MDIDKAKEKIESAKTSLPVGHKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0066222_11139341	3300004460	Marine	MDVDKAKEKIESAKTSLPVGHKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0066223_12121761	3300004461	Marine	MAEELAKFIAKIEGAKTSLPDNNDREWLDGFNHGLDWAIRILTGDKSAS*
Ga0065177_10181014	3300004685	Freshwater	MDLEKAKAKIEAAKTSVPSGHKDFDWMEGFNAGLDWALRILTGDKSAS*
Ga0065174_10078922	3300004687	Freshwater	MDIERAKQKIEDAKTSVPLNHKDYEWMDGFNHGLDWALRILEGDKSAS*
Ga0065174_10850492	3300004687	Freshwater	MDLEKAKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS*
Ga0065176_10234521	3300004691	Freshwater	MDINKVKDKIDAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0007804_10034593	3300004770	Freshwater	MDLEKTKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS*
Ga0007804_10602652	3300004770	Freshwater	MKAAMDITKIIAKIESNKTTLPPEHKDAVWMDGFNHGLDWAVRILERDKSAS*
Ga0007827_100241191	3300004777	Freshwater	MKAVMDITKIIAKIESNKTTLPLEHKDAMWMDGFNHGLDWAIRILEGDKSAS*
Ga0007854_100364852	3300004806	Freshwater	MDINKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0007854_102754302	3300004806	Freshwater	MAIGPMTDEELQKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY*
Ga0007809_1000008144	3300004807	Freshwater	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS*
Ga0007809_101181362	3300004807	Freshwater	MKAAMDITKIIAKIESNKTTLPLEHKDAVWMDGFNHGLDWAIRILEGDKSAS*
Ga0007876_100008839	3300006071	Freshwater	MDIERAKQKIEDAKTSMPLGHKDYEWMDGFNHGLDWALRILEGDKSAS*
Ga0007876_10529602	3300006071	Freshwater	MDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILEGDKSAS*
Ga0007881_10358952	3300006072	Freshwater	MKAAMDITKIIAKIESNKTTLAPEHKDAVWMDGFNHGLDWAIRILEGDKSAS*
Ga0007810_10173936	3300006101	Freshwater	MKAAMDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILEGDKSAS*
Ga0007819_10279492	3300006105	Freshwater	MDITKIIAKIESNKTTLAPEHKDAVWMDGFNHGLDWAIRILEGDKSAS*
Ga0007862_10067294	3300006108	Freshwater	MTDEELQKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY*
Ga0007857_10018501	3300006112	Freshwater	KAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS*
Ga0007857_11002481	3300006112	Freshwater	AKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS*
Ga0007858_10276114	3300006113	Freshwater	MDLNKAMDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILTGDKSAS*
Ga0007818_10825062	3300006117	Freshwater	MDITKIIAKIESNKTTLPPEHKDAVWMDGFNHGLDWAVRILERDKSAS*
Ga0007866_10077676	3300006119	Freshwater	KIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAF*
Ga0007867_10354453	3300006120	Freshwater	MDLSLAKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS*
Ga0007828_10003958	3300006128	Freshwater	MDLNKAMDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAF*
Ga0114963_1001850410	3300009154	Freshwater Lake	VAEELTKYIEKIKSAKTNLSPEDKDFQWMEGFNHGLEWAVRILTGDKSAS*
Ga0114951_100526815	3300009502	Freshwater	MDIIKIIAKIESNKTTLPPEHKDAVWMEGFNHGLDWAIRILEGDKSAS*
Ga0133913_1000353637	3300010885	Freshwater Lake	MAEGIEKFIAKIEAAKTEPLNPKDSEWFEGFNQGLDWAIRILTGDKSAS*
Ga0133913_112527252	3300010885	Freshwater Lake	MDLEKAKAKIEAAKTSVPLDHKDFDWMEGFNAGLDWALRILTGDKSAS*
Ga0164293_100377261	3300013004	Freshwater	IEEFIKRIESAKTLLPETHKDYEWIDGFNHGLDWAIRILRKDKSAY*
Ga0157563_10482791	3300013068	Freshwater	MDIERAKQKIEDAKTSMPLGHKDYEWMDGFNHGLDWALRILE
Ga0164296_12142131	3300013093	Freshwater	ARKLSAVSLTTNLMRGCQMLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS*
Ga0164297_1000971813	3300013094	Freshwater	MDIERAKQKIEDAKTSMALGHKDYEWMDGFNHGLDWALRILEGDKSAS*
Ga0136642_11546742	3300013285	Freshwater	MDLEKAKAKIEAAKTSLPPEHKDFDWMEGFNAGLDWALRILTGDKSAS*
Ga0136642_11741952	3300013285	Freshwater	TKIIAKIESNKTTLPSEHKDAVWMDGFNHGLDWAVRILEGDKSAS*
Ga0136641_10130348	3300013286	Freshwater	MDLDEAKEKIESAKTSLPVGHKDTDWMEGFNAGLDWAL
Ga0136641_10442784	3300013286	Freshwater	MDLDEAKEKIESAKTSLPVGHKDTDWMEGFNAGLDWALRILNGDKSAS*
Ga0180052_1527062	3300016684	Freshwater	MDIERAKQKIEDAKTSMPLGHKDYEWMDGCNHGLDWALRILEGDKSAS
Ga0214194_1020812	3300020686	Freshwater	MDITKIIAKIESNKTTLPLEHKDAVWMDGFNHGLDWAIRILEGDKSAS
Ga0214194_1051622	3300020686	Freshwater	MSQDIAKARQKIEDAKTSVPLDHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0214226_10353562	3300020693	Freshwater	MDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILEGDKSAS
Ga0214207_100109316	3300020716	Freshwater	MDKYIEKIESAKTILEPQDKDFEWMDGFNHGLDWAIRILTGDKSAS
Ga0214207_100161311	3300020716	Freshwater	MDLNKAMDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0214207_10038041	3300020716	Freshwater	LAEMSQDIAKARQKIEDAKTSVPLDHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0214246_100005950	3300020727	Freshwater	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILSGDKSAS
Ga0214170_10189083	3300020731	Freshwater	MSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0214172_100012535	3300020733	Freshwater	MDIERAKQKIEDAKTSVPLNHKDYEWMDGFNHGLDWALRILEGDKSAS
Ga0214212_100148910	3300021123	Freshwater	DGRTRALAEMSQDIAKARQKIEDAKTSVPLDHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0214180_10139791	3300021130	Freshwater	MSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILD
Ga0214180_10141471	3300021130	Freshwater	MLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILD
Ga0214206_10296332	3300021131	Freshwater	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0214171_10377733	3300021134	Freshwater	MKAAMDITKIIAKIESNKTTLPLEHKDAVWMDGFNHGLDWAIRILEGDKSAS
Ga0214164_10345644	3300021138	Freshwater	MDLEKTKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS
Ga0214166_10726113	3300021139	Freshwater	MLSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0214192_10036712	3300021142	Freshwater	MRGCQMLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0212088_1001213211	3300022555	Freshwater Lake Hypolimnion	MDIIKIIAKIESNKTTLPPEHKDAVWMEGFNHGLDWAIRILEGDKSAS
Ga0248169_10351820	3300022602	Freshwater	MRGCQMLSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0208501_10001412	3300025338	Freshwater	MTDEELHKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY
Ga0208383_10358372	3300025357	Freshwater	MAIGPMTDEELHKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY
Ga0208504_100039116	3300025358	Freshwater	MDLEKAKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0208504_10050905	3300025358	Freshwater	MDLEKAKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS
Ga0208382_10228293	3300025369	Freshwater	MDLEKTKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTG
Ga0207957_10151581	3300025372	Freshwater	MDINKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0207957_10168961	3300025372	Freshwater	MKAAMDITKIIAKIESNKTTLPPEHKDAVWMDGFNHGLDWAVRILERDKSAS
Ga0208738_10008112	3300025379	Freshwater	MKAVMDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILEGDKSAS
Ga0208250_100005415	3300025383	Freshwater	MDIERAKQKIEDAKTSMPLGHKDYEWMDGFNHGLDWALRILEGDKSAS
Ga0207959_10171243	3300025387	Freshwater	MTDEELQKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY
Ga0208380_10131843	3300025392	Freshwater	MNLEKAKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAF
Ga0208387_10074103	3300025400	Freshwater	MDITKIIAKIESNKTTLAPEHKDAVWMDGFNHGLDWAIRILEGDKSAS
Ga0207955_10075343	3300025401	Freshwater	MDITKIIAKIESNKTTLPPEHKDAVWMDGFNHGLDWAVRILERDKSAS
Ga0208875_10032444	3300025410	Freshwater	MDLSLAKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS
Ga0208875_10444152	3300025410	Freshwater	MDLEKAKAKIEAAKTSVPSGHKDFDWMEGFNAGLDWALRILTGDKSAS
Ga0208865_10354461	3300025411	Freshwater	MDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSA
Ga0208614_10308013	3300025413	Freshwater	MDITKIIAKIESNKTTLPPEHKDAVWMDGFNHGLDWAIRILEGDKSAS
Ga0207958_10387463	3300025421	Freshwater	DLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILTGDKSAS
Ga0208739_100006856	3300025426	Freshwater	MKAAMDITKIIAKIESNKTTLAPEHKDAVWMDGFNHGLDWAIRILEGDKSAS
Ga0208500_10020133	3300025429	Freshwater	MDITKIIAKIESNKTTLPLEHKDAMWMDGFNHGLDWAIRILEGDKSAS
Ga0208500_10129092	3300025429	Freshwater	MYLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0208260_10878203	3300025467	Freshwater	VMDLNKVKDKIEAAKTSVPLESKDFDWMEGFNAGLDWALRILNGDKSAS
Ga0208379_11218811	3300025598	Freshwater	IEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS
Ga0208104_10208922	3300025773	Freshwater	MDLEKTKAKIEAAKTSVPSGHKDFDWMEGFNAGLDWALRILTGDKSAS
Ga0208498_10517622	3300025785	Freshwater	MDITKIIAKIESNKTTLAPEHKDAMWMDGFNHGLDWAIRILE
Ga0208872_11675881	3300025838	Freshwater	AKIEAAKTSVPVDHKDYDWMEGFNAGLDWALRILTGDKSAS
Ga0208872_11897342	3300025838	Freshwater	MAIGPMTDEELQKIKDKIENAKTNVPKDRGDYEWMDGFNHGLDWALRILSKDKSAY
Ga0208872_12967212	3300025838	Freshwater	MDLEKTKAKIEAAKTSVPVDHKDYDWMEGFNAGLDWAL
Ga0209188_101315810	3300027708	Freshwater Lake	VAEELTKYIEKIKSAKTNLSPEDKDFQWMEGFNHGLEWAVRILTGDKSAS
Ga0209829_1000042243	3300027777	Freshwater Lake	MAEGIEKFIAKIEAAKTEPLNPKDSEWFEGFNQGLDWAIRILTGDKSAS
Ga0209777_101567442	3300027896	Freshwater Lake Sediment	MAAEVATFVAKIESYKTVLKSEDKDYEWMDGFNHGLDWAIRILTGDKSAS
Ga0119944_10152593	3300029930	Aquatic	FINKIEDAKTHLPDGHKDKEWIEGFNAGLDWAIRILNKDKSAY
Ga0316217_100975062	3300031813	Freshwater	MMSDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0316220_101402611	3300031884	Freshwater	MLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0316220_12176653	3300031884	Freshwater	MLNDIEKAKQKIEAAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0316218_100963315	3300032117	Freshwater	MLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRI
Ga0316218_12015833	3300032117	Freshwater	MLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDK
Ga0316221_12881801	3300032665	Freshwater	TNLMRGCQMLNDIEKAKQKMEDAKTSMPLGHKDYEWMDGFNHGLDWAIRILDKDKSAS
Ga0316229_11256493	3300032676	Freshwater	MMSDIEKAKQKMEDAKTSMPLDHKDYEWMDGFNHGLDWAIRILDKDKSAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences