Scaffold Ga0224509_10165193

Overview

Basic Information

• Taxon OID: 3300022306
• Scaffold ID: Ga0224509_10165193
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 786
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044516	Metagenome / Metatranscriptome	154	Y
F105332	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224509_101651931	F044516	AGGAG	MCRDTGYYEPRQDVTTKVVEEMFEKQNKSLMTYYLKMAYQDDQHTYMNDLQWVLQNKFDDVDLNAVKNHVEELLLIDDSDRELFEEEE
Ga0224509_101651932	F105332	GGTGG	MTKTYWVKFNNREFKQDKELVYKMLTDLRLEEINKEIK