NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105332

Metagenome Family F105332

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105332
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 38 residues
Representative Sequence MPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Number of Associated Samples 77
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 67.00 %
% of genes near scaffold ends (potentially truncated) 24.00 %
% of genes from short scaffolds (< 2000 bps) 76.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (44.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(76.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.89%    β-sheet: 2.63%    Coil/Unstructured: 39.47%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF14311DUF4379 9.00
PF04098Rad52_Rad22 7.00
PF13384HTH_23 2.00
PF00856SET 2.00
PF00145DNA_methylase 1.00
PF16945Phage_r1t_holin 1.00
PF00565SNase 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.00 %
UnclassifiedrootN/A44.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10131624Not Available959Open in IMG/M
3300000101|DelMOSum2010_c10184727Not Available718Open in IMG/M
3300000116|DelMOSpr2010_c10102061All Organisms → Viruses → Predicted Viral1078Open in IMG/M
3300000116|DelMOSpr2010_c10128955All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.899Open in IMG/M
3300000116|DelMOSpr2010_c10165944Not Available740Open in IMG/M
3300000117|DelMOWin2010_c10182540Not Available661Open in IMG/M
3300001460|JGI24003J15210_10009220All Organisms → Viruses → Predicted Viral4049Open in IMG/M
3300006027|Ga0075462_10003364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5196Open in IMG/M
3300006329|Ga0068486_1094194All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes676Open in IMG/M
3300006484|Ga0070744_10026637All Organisms → Viruses → Predicted Viral1712Open in IMG/M
3300006484|Ga0070744_10047737All Organisms → Viruses → Predicted Viral1257Open in IMG/M
3300006735|Ga0098038_1005367All Organisms → cellular organisms → Bacteria5219Open in IMG/M
3300006752|Ga0098048_1009760All Organisms → Viruses → Predicted Viral3437Open in IMG/M
3300006752|Ga0098048_1100593Not Available875Open in IMG/M
3300006752|Ga0098048_1127198Not Available764Open in IMG/M
3300006789|Ga0098054_1112786All Organisms → Viruses → Predicted Viral1014Open in IMG/M
3300006789|Ga0098054_1303121Not Available571Open in IMG/M
3300006793|Ga0098055_1069715All Organisms → Viruses → Predicted Viral1392Open in IMG/M
3300006793|Ga0098055_1246227Not Available673Open in IMG/M
3300006802|Ga0070749_10394460Not Available764Open in IMG/M
3300006802|Ga0070749_10598891All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium594Open in IMG/M
3300006810|Ga0070754_10084436All Organisms → Viruses → Predicted Viral1595Open in IMG/M
3300006867|Ga0075476_10028867All Organisms → Viruses → Predicted Viral2341Open in IMG/M
3300006869|Ga0075477_10417542Not Available520Open in IMG/M
3300006916|Ga0070750_10470370Not Available518Open in IMG/M
3300006920|Ga0070748_1026194All Organisms → Viruses → Predicted Viral2415Open in IMG/M
3300006921|Ga0098060_1088809Not Available882Open in IMG/M
3300006924|Ga0098051_1126394Not Available680Open in IMG/M
3300006925|Ga0098050_1108078Not Available709Open in IMG/M
3300007540|Ga0099847_1033423All Organisms → Viruses → Predicted Viral1647Open in IMG/M
3300007900|Ga0111031_1044278All Organisms → Viruses → Predicted Viral2757Open in IMG/M
3300008999|Ga0102816_1203531All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium619Open in IMG/M
3300009000|Ga0102960_1014717All Organisms → Viruses → Predicted Viral2948Open in IMG/M
3300009001|Ga0102963_1125752All Organisms → Viruses → Predicted Viral1039Open in IMG/M
3300009027|Ga0102957_1043100All Organisms → Viruses → Predicted Viral1547Open in IMG/M
3300009086|Ga0102812_10393194Not Available755Open in IMG/M
3300009124|Ga0118687_10145361Not Available845Open in IMG/M
3300009425|Ga0114997_10412199All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium729Open in IMG/M
3300009433|Ga0115545_1331094Not Available504Open in IMG/M
3300009443|Ga0115557_1243148Not Available691Open in IMG/M
3300010150|Ga0098056_1188289Not Available691Open in IMG/M
3300010150|Ga0098056_1203009Not Available662Open in IMG/M
3300017697|Ga0180120_10175297All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium898Open in IMG/M
3300017713|Ga0181391_1000192All Organisms → cellular organisms → Bacteria18297Open in IMG/M
3300017727|Ga0181401_1017174All Organisms → Viruses → Predicted Viral2204Open in IMG/M
3300017727|Ga0181401_1150100Not Available568Open in IMG/M
3300017748|Ga0181393_1190644All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium500Open in IMG/M
3300017751|Ga0187219_1174172Not Available607Open in IMG/M
3300017752|Ga0181400_1164618Not Available624Open in IMG/M
3300017752|Ga0181400_1200975Not Available550Open in IMG/M
3300017755|Ga0181411_1007787All Organisms → Viruses → Predicted Viral3620Open in IMG/M
3300017755|Ga0181411_1046436Not Available1345Open in IMG/M
3300017758|Ga0181409_1089066Not Available926Open in IMG/M
3300017783|Ga0181379_1004765All Organisms → cellular organisms → Bacteria5940Open in IMG/M
3300017783|Ga0181379_1298948Not Available547Open in IMG/M
3300017786|Ga0181424_10164656Not Available948Open in IMG/M
3300017950|Ga0181607_10026703All Organisms → Viruses → Predicted Viral4241Open in IMG/M
3300017963|Ga0180437_10009658Not Available11895Open in IMG/M
3300020053|Ga0181595_10353807Not Available583Open in IMG/M
3300020188|Ga0181605_10348419Not Available604Open in IMG/M
3300020269|Ga0211484_1002130All Organisms → cellular organisms → Bacteria5246Open in IMG/M
3300020413|Ga0211516_10040372All Organisms → Viruses → Predicted Viral2407Open in IMG/M
3300020810|Ga0181598_1013790Not Available5241Open in IMG/M
3300021185|Ga0206682_10347269Not Available637Open in IMG/M
3300021375|Ga0213869_10007592All Organisms → cellular organisms → Bacteria6715Open in IMG/M
3300021375|Ga0213869_10200138Not Available901Open in IMG/M
3300021958|Ga0222718_10032936All Organisms → Viruses → Predicted Viral3446Open in IMG/M
3300021958|Ga0222718_10087314All Organisms → Viruses → Predicted Viral1865Open in IMG/M
3300022057|Ga0212025_1007868All Organisms → Viruses → Predicted Viral1511Open in IMG/M
3300022067|Ga0196895_1000774All Organisms → Viruses → Predicted Viral3301Open in IMG/M
3300022069|Ga0212026_1037673Not Available719Open in IMG/M
3300022071|Ga0212028_1036430Not Available906Open in IMG/M
3300022167|Ga0212020_1040509Not Available789Open in IMG/M
3300022167|Ga0212020_1070681All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium588Open in IMG/M
3300022200|Ga0196901_1188843Not Available667Open in IMG/M
3300022306|Ga0224509_10165193All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium786Open in IMG/M
(restricted) 3300023210|Ga0233412_10091629All Organisms → Viruses → Predicted Viral1270Open in IMG/M
3300024346|Ga0244775_10171603All Organisms → Viruses → Predicted Viral1826Open in IMG/M
3300024346|Ga0244775_10339658All Organisms → Viruses → Predicted Viral1241Open in IMG/M
3300025070|Ga0208667_1009199All Organisms → Viruses → Predicted Viral2346Open in IMG/M
3300025070|Ga0208667_1011645All Organisms → Viruses → Predicted Viral1972Open in IMG/M
3300025070|Ga0208667_1039350All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium805Open in IMG/M
3300025084|Ga0208298_1011632All Organisms → Viruses → Predicted Viral2133Open in IMG/M
3300025103|Ga0208013_1055938All Organisms → Viruses → Predicted Viral1060Open in IMG/M
3300025103|Ga0208013_1083316All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium824Open in IMG/M
3300025108|Ga0208793_1168275Not Available568Open in IMG/M
3300025120|Ga0209535_1006246All Organisms → cellular organisms → Bacteria7188Open in IMG/M
3300025120|Ga0209535_1045621All Organisms → Viruses → Predicted Viral1914Open in IMG/M
3300025543|Ga0208303_1042162All Organisms → Viruses → Predicted Viral1151Open in IMG/M
3300025632|Ga0209194_1156051Not Available534Open in IMG/M
3300025645|Ga0208643_1015690All Organisms → Viruses → Predicted Viral2758Open in IMG/M
3300025671|Ga0208898_1150553Not Available629Open in IMG/M
3300025769|Ga0208767_1207279Not Available652Open in IMG/M
3300026138|Ga0209951_1017245All Organisms → Viruses → Predicted Viral1601Open in IMG/M
3300026187|Ga0209929_1090381Not Available807Open in IMG/M
3300031851|Ga0315320_10286213All Organisms → Viruses → Predicted Viral1180Open in IMG/M
3300032277|Ga0316202_10061871All Organisms → Viruses → Predicted Viral1745Open in IMG/M
3300034374|Ga0348335_052864All Organisms → Viruses → Predicted Viral1551Open in IMG/M
3300034418|Ga0348337_083141All Organisms → Viruses → Predicted Viral1109Open in IMG/M
3300034418|Ga0348337_179416Not Available555Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine24.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous23.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater13.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine6.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water5.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh4.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine4.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006329Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500mEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007900Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1EnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300020053Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020269Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)EnvironmentalOpen in IMG/M
3300020413Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)EnvironmentalOpen in IMG/M
3300020810Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022306Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300026138Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1013162413300000101MarineMTKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINKEEK*
DelMOSum2010_1018472733300000101MarineMYKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
DelMOSpr2010_1010206113300000116MarineMYKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE
DelMOSpr2010_1012895533300000116MarineMAKTYWIKFNNKDFKQXXELVYKMLTDLRLQEINKEEK*
DelMOSpr2010_1016594423300000116MarineMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
DelMOWin2010_1018254023300000117MarineMPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEK*
JGI24003J15210_10009220113300001460MarineMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEIK*
Ga0075462_1000336423300006027AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEE*
Ga0068486_109419443300006329MarineMKKSYWIRFKNSDFKKDKELVYKMLTDLRIKEMDINA*
Ga0070744_1002663773300006484EstuarineMAKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEE*
Ga0070744_1004773753300006484EstuarineMSNMPRTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEIK*
Ga0098038_1005367123300006735MarineMAKTYWVKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
Ga0098048_1009760103300006752MarineMYKTYWIKFNNKDFKEDKELVYKMLTDLRLKEINKENK*
Ga0098048_110059343300006752MarineMPKTYWIKFNNKEFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0098048_112719853300006752MarineMPKTYWIKFNKKDFKQDKELVYKMLTDVRLQEINKEEQ*RILK*
Ga0098054_111278623300006789MarineMANTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEK*
Ga0098054_130312123300006789MarineMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0098055_106971563300006793MarineMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEE*
Ga0098055_124622713300006793MarineIMPKTYWIKFNNKEFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0070749_1039446023300006802AqueousMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEYQV*
Ga0070749_1059889133300006802AqueousIMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
Ga0070754_1008443633300006810AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE*
Ga0075476_1002886763300006867AqueousMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE*
Ga0075477_1041754233300006869AqueousGRIMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE*
Ga0070750_1047037013300006916AqueousIMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEE*
Ga0070748_102619493300006920AqueousMYKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINKEEE*
Ga0098060_108880923300006921MarineMANTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*RILK*
Ga0098051_112639413300006924MarineIMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0098050_110807823300006925MarineMANTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0099847_103342313300007540AqueousNGGRIMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEIK*
Ga0111031_104427893300007900Marine SedimentKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINKEEK*
Ga0102816_120353113300008999EstuarineMPRTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEIK*
Ga0102960_101471733300009000Pond WaterMAKTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEGE*
Ga0102963_112575233300009001Pond WaterMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE*
Ga0102957_104310053300009027Pond WaterMAKTYWIKFNNKDFKQDKELVYKMLTDARLQEINKKEK*
Ga0102812_1039319423300009086EstuarineMAKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0118687_1014536113300009124SedimentMTKTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEE*
Ga0114997_1041219923300009425MarineMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK*
Ga0115545_133109433300009433Pelagic MarineMPKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINKEEE*
Ga0115557_124314843300009443Pelagic MarineMPKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINREEE*
Ga0098056_118828913300010150MarineMANTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEE
Ga0098056_120300913300010150MarineRIMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ*
Ga0180120_1017529733300017697Freshwater To Marine Saline GradientMAKTYWIKFNNKDFKKDKELVYKMLTDLRVKEINKEEK
Ga0181391_1000192203300017713SeawaterMDKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEIK
Ga0181401_101717433300017727SeawaterMPKTYWIKFNNKDFKHDKELVYKMLTDVRLQEINKEEQ
Ga0181401_115010013300017727SeawaterMAKTYWIKFNNREFKQDKELVYKMLTDVRLQEINKEE
Ga0181393_119064433300017748SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDSRLEEINKEIK
Ga0187219_117417233300017751SeawaterAKTYWIKFNNKNFKQDKELVYKMLTDVRLQEINKEEE
Ga0181400_116461823300017752SeawaterMDKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKE
Ga0181400_120097513300017752SeawaterTMDKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEK
Ga0181411_100778723300017755SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDARLQEINKEEQ
Ga0181411_104643623300017755SeawaterMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEE
Ga0181409_108906623300017758SeawaterMPKTYWIKFNNKDFKQDKELVYKMLTDVQLQEINKEEQ
Ga0181379_1004765153300017783SeawaterMTKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEIK
Ga0181379_129894823300017783SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEK
Ga0181424_1016465633300017786SeawaterMAKTYWIKFNNKDFKKDKELVYKMLTDLRLEEINKEIK
Ga0181607_1002670333300017950Salt MarshMPKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINREEE
Ga0180437_10009658183300017963Hypersaline Lake SedimentMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE
Ga0181595_1035380733300020053Salt MarshGGRIMPKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINREEE
Ga0181605_1034841913300020188Salt MarshXNKAGGRIMPKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINREEE
Ga0211484_100213073300020269MarineMKKSYWIRFKNSDFKKDKELVYKMLTDLRIKEMDINA
Ga0211516_1004037263300020413MarineMKRTYWIKFKNSEFKKDNELVYKKLTNLRLQEMKHNA
Ga0181598_1013790153300020810Salt MarshMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEE
Ga0206682_1034726933300021185SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEIK
Ga0213869_1000759253300021375SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0213869_1020013823300021375SeawaterMYKTYWIKFNNKDFKQDKELVYKMLTDLRVKEINKEEE
Ga0222718_1003293673300021958Estuarine WaterMAKTYWIKFNNKDFKQDKELVYKMLTDARLQEINKKEK
Ga0222718_1008731443300021958Estuarine WaterMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEGE
Ga0212025_100786813300022057AqueousXXNKTGGRMMPKTYWIKFNNEDFKQDKELVYKMLTDLRLQEINKEEYQV
Ga0196895_100077423300022067AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0212026_103767313300022069AqueousPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0212028_103643013300022071AqueousAGGRIMPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0212020_104050923300022167AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0212020_107068133300022167AqueousIMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0196901_118884313300022200AqueousTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0224509_1016519323300022306SedimentMTKTYWVKFNNREFKQDKELVYKMLTDLRLEEINKEIK
(restricted) Ga0233412_1009162923300023210SeawaterMAKTYWIKFNNKDFKQDKELVYKMLTDARLQEINKEEE
Ga0244775_1017160343300024346EstuarineMAKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEE
Ga0244775_1033965853300024346EstuarineMSNMPRTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEIK
Ga0208667_100919963300025070MarineMPKTYWIKFNNKEFKQDKELVYKMLTDVRLQEINKEEQ
Ga0208667_101164533300025070MarineMAKTYWVKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0208667_103935023300025070MarineMYKTYWIKFNNKDFKEDKELVYKMLTDLRLKEINKENK
Ga0208298_101163293300025084MarineMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEE
Ga0208013_105593823300025103MarineMANTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEK
Ga0208013_108331643300025103MarineMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ
Ga0208793_116827513300025108MarineGGIMPKTYWIKFNNKDFKQDKELVYKMLTDVRLQEINKEEQ
Ga0209535_100624663300025120MarineMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEIK
Ga0209535_104562143300025120MarineMPRTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEIK
Ga0208303_104216233300025543AqueousMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEYQV
Ga0209194_115605133300025632Pelagic MarineMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEKE
Ga0208643_101569083300025645AqueousMYKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEK
Ga0208898_115055333300025671AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEK
Ga0208767_120727933300025769AqueousYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEYQV
Ga0209951_101724533300026138Pond WaterMAKTYWVKFNNKEFKQDKELVYKMLTDLRLEEINKEGE
Ga0209929_109038123300026187Pond WaterMAKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0315320_1028621333300031851SeawaterMAKTYWIKFNNKDFKHDKELVYKMLTDLRLEEINKEIK
Ga0316202_1006187143300032277Microbial MatMTKTYWIKFNNKDFKQDKELVYKMLTDLRLEEINKEEE
Ga0348335_052864_888_10103300034374AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEEYQV
Ga0348337_083141_1003_11073300034418AqueousMPKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINK
Ga0348337_179416_3_1373300034418AqueousKHNGGRIMAKTYWIKFNNKDFKQDKELVYKMLTDLRLQEINKEE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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