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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021964 Open in IMG/M |
| Scaffold ID | Ga0222719_10260355 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1147 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.495 | Long. (o) | -122.0933 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F013517 | Metagenome / Metatranscriptome | 270 | Y |
| F038646 | Metagenome | 165 | Y |
| F093735 | Metagenome / Metatranscriptome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222719_102603551 | F093735 | N/A | SHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA |
| Ga0222719_102603552 | F038646 | N/A | MNNSDDILEYARQLAMQPPMTPPKDHDYRLQIAEGTHWELVKLAAELRMDPESYAEEILNMHAEDAVSKRIVAKAYNDPSWVAKLNLECVDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGQENFILTALRSACNDVLSTHVD |
| Ga0222719_102603553 | F002738 | N/A | MFYPLMSIDTCGLSSEQYEEFFEKNVRFGAKLYLKTCNILNEEGAGHIDFKTILDVYQEAVYTANDDCRRYQKSNNPEALKEATADIFGITPTREELMEEIQSVNAKVEALVDYINNLITVTTAGLEGIATTLDDTVD |
| Ga0222719_102603554 | F013517 | N/A | MFESLFATVLPVMKDLLWAAAGMLLTYVLNKVQSQLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |