Scaffold Ga0222712_10011203

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10011203
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8082
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1001120311	F104496	N/A	MKKRTEILINSIIILLGANYESYLLLGAGVLCLSLVLISKTKRDAIKN
Ga0222712_1001120312	F105026	N/A	MQSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0222712_1001120313	F037637	N/A	MNWQIKKKRTKQVTVSFEWTEKGDLISILSDLSTLISSGVETYHNQKKSILTADKWHEIEFSQKYVDKIHEEVESDINGELKLVIKSKI
Ga0222712_100112037	F033362	N/A	MIPINQFIEVIKKHGALGVLTLWLTYTHFEVQDVKERLYNCLDRQTEINRSPIKENKQEKPATTNEIIGVLETKKRILAKK
Ga0222712_100112039	F024535	GGA	MAKKIKIDTDNIDVNLEKDGTSLKVDIDTPNVDIKVVRDEINKEFNLDSKNIDIHVEKTPDGVEVKVDAKGVLWKAIAKRIVKFVLRRFKVGK