Scaffold Ga0222712

Basic Information
Taxon OID	3300021963 Open in IMG/M
Scaffold ID	Ga0222712_10000386 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021963 Open in IMG/M

Scaffold ID

Ga0222712_10000386 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60081
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (44.19%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

60081

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (44.19%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.1516	Long. (^o)	-121.6883	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

38.1516

Long. (^o)

-121.6883

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009329	Metagenome / Metatranscriptome	319	Y
F020890	Metagenome / Metatranscriptome	221	Y
F029725	Metagenome / Metatranscriptome	187	Y
F033413	Metagenome / Metatranscriptome	177	Y
F048809	Metagenome / Metatranscriptome	147	Y
F057119	Metagenome / Metatranscriptome	136	Y
F057764	Metagenome / Metatranscriptome	136	Y
F066743	Metagenome / Metatranscriptome	126	Y
F070027	Metagenome / Metatranscriptome	123	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_1000038621	F057764	N/A	MKKKYPYWNFWKVVFAGWLIRYPRQCFTIFGGTVGFLFVLIYNAVTK
Ga0222712_1000038628	F066743	N/A	MNQQLIRSIEQQLENLMTLDEDLAWEYECQLYYDCNDDEEPKPIVELFTPELLDKLTQTVYQLDN
Ga0222712_1000038631	F033413	N/A	MTAHFVNLFAQNTDLTAEFVTDFKRTFKSSMFDKYTRNDGKVYIKHSVDSNTMEDVFSVEAMIYEYKGCWCGTQKTFGKFDVFADAIACARNVQLSEDCLSEDGYLSLMRN
Ga0222712_1000038642	F029725	N/A	MINRTELEWFLKEKCREDADLFDTVISEYVWNLSESKLNELEDFLANNFGDD
Ga0222712_1000038655	F020890	AGG	MDHFDDVQIEEFSSFDFVEEMNEGLFEEEENDKSFNSYLNSNIDY
Ga0222712_1000038658	F009329	AGGAG	MTPYELRFEIFKQAYNMLNDQFSVEYDTAVRWNEVEKKEVPMDYPEFPTLNQVLEQAEIINDFVSSK
Ga0222712_1000038665	F057119	GGAG	MTFLLGMGLGSLLTIGAAFIFAADQNILDEGDTND
Ga0222712_1000038667	F090331	N/A	MSIGLAFAIYTTLVAFVSTIMLYYLKVIYPREEAQLKEKSK
Ga0222712_1000038675	F048809	GGA	MIRKFIKWFISPNEESITDDVYSKLIELQERIEVLESESVENSNCFYELSNCIDAVDARIDILTLESWNKKDV
Ga0222712_1000038678	F070027	N/A	MTSKINLVLALQQIENISNLVRENNYEAFFTSHLLPIKFEIERQIVLHNHGKEVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222712_10000386

Overview

Ecosystem & Geography

Associated Families

Sequences