Scaffold Ga0222713_10049632

Overview

Basic Information

• Taxon OID: 3300021962
• Scaffold ID: Ga0222713_10049632
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3215
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.06
  • Long. (^o): -121.8
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003965	Metagenome / Metatranscriptome	459	Y
F007263	Metagenome / Metatranscriptome	354	Y
F015208	Metagenome / Metatranscriptome	256	Y
F029434	Metagenome / Metatranscriptome	188	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222713_1004963211	F085708	GGA	MTTNRILTTLVQLGIGIPALLMARLVWREIVSDYREWANSH
Ga0222713_1004963214	F003965	AGG	MITLNTMCREHNPMKSAISEVLDTQYTFCQDCEQNIERWYDDTDPERLPMWTDWRVR
Ga0222713_100496323	F015208	GGAG	MYKITVANDSEPLHFVKEYSDELEAHTEFAKYVDWGFADEYSTVNLYTPSGKCYTKLFYREGRRVVVK
Ga0222713_100496325	F007263	AGG	MIKEYLDENEFYFIKDEIKFCCDEQQFVHVCKAHGEQQGCYFCEFNPYENCECE
Ga0222713_100496327	F001562	GAGG	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPVAFSIGLIEHEDYLAELEEE
Ga0222713_100496328	F029434	AGG	MKKYTFGVWLDIDAEDENQAISLFDSVVKNTFVSDSYCFEWKEVADEIAI