Scaffold Ga0222714_10090789

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10090789
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1961
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100907891	F024535	GGA	MAKKIKIDTDKIDVNLEKDGTSLKVDIDTPNVDIKVVRDEINKEFNLDSKNIDIHVKKTPEGVEVKVDAKGVLWKAIAKRIVKFVLRRFKVGK
Ga0222714_100907893	F104496	N/A	MKKRTGILINSIIILLGANYESYLLLGAGVLCLSLVLISKSKRDAIKN
Ga0222714_100907894	F105026	N/A	MQSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0222714_100907895	F037637	N/A	MNWQIKKKRTKQVTVSFEWTEKGDLISILSDLSALISSGVETYHNQKKSILTANKWHEIEFSQKYVDKIHEEVESDINGELKLVIKSKI