Scaffold Ga0222714_10035101

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10035101
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3670
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F008496	Metagenome / Metatranscriptome	332	Y
F027180	Metagenome / Metatranscriptome	195	Y
F047680	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1003510111	F008496	N/A	MTEQVAVTPAYDPKATILVRKGYYYGSPADSKYEMENADDISRTYWKLEALQETNNRNSRAQEKLKDYLVENFDEIGEEHATEIANIFGIELSKEVEVVFDVTIRATISVPVGKDVEDLSVYDFDIEISSNESEYEIEEFDADIDSIRNYF
Ga0222714_100351014	F047680	AGG	MSKMKDLYGILTEWYPDGNYTEEQLWEAIAESQGMDYSEIADGDLAEWL
Ga0222714_100351016	F027180	AGGTGG	MKLFNRKPELTEDEVFAKLDKLMGEMASIDIYIQYLEQREGM
Ga0222714_100351017	F002502	GAG	MAKTIAPTVGSQFTTAKSKVTGVVQEVVKNANGTMRIRLDVNGQDRWTTAK