NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10007828

Scaffold Ga0222714_10007828


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10007828 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9700
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (34.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004255Metagenome / Metatranscriptome446Y
F010681Metagenome / Metatranscriptome300Y
F020890Metagenome / Metatranscriptome221Y
F048809Metagenome / Metatranscriptome147Y
F085647Metagenome / Metatranscriptome111Y
F090331Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000782813F010681N/AMKMRLTPNQQFWANIFCCAVERSNIYFNEKDLDRHAREHTTVVLALQKGEKFWRELL
Ga0222714_1000782815F048809AGAAGMIRKLIEWFFTSTEKFDVGDDVYSKLIELQERIEALEAENVENSNCFYELSNSIDAVDARIDILTLENWNKKDV
Ga0222714_1000782822F090331N/AMSIGFAIAIYTALVAFVSSTVLYYFKVMYPREEQQLKEKLK
Ga0222714_1000782830F020890N/AMDCFDDLQIEEFSSFDFVEEMNEDLFEEEEDTKSFNKLINSNIDF
Ga0222714_1000782834F085647N/AMLWQDRNGTWYSTVSPIDMKIERAMIEANANKVWEEKERSGDWLFDEMFGG
Ga0222714_100078285F004255N/AMVHLLNTSISYTVQMNEKSKIYYNVWCCAYQRRGLYKGTDREHREHETVRMCLDMKDAKWYVFDSEKPHYL
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