Scaffold Ga0222714_10003397

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10003397
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16254
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F091912	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_100033971	F091912	N/A	KYQEMFNDYINQHAKQDAEKLGGAYGIKAGVEILPASRALSDAEVKALPARDPMTGEDSS
Ga0222714_1000339716	F008128	N/A	MEKVAVPTLTVSFAVDLDVEYNSFGGKTADEIAEALQEELDNLLFETAPSVKGVYTSVTAINFND
Ga0222714_100033974	F002333	N/A	MSTQLQTELNAAQASIYTRTNIRRAFQDFDDTSIAGIYLRGDDCIVVRTDGSEQAYNRELIKKAFQHYTNRLKDFFSYLGPNYRGPSVWHHNAYILFKGWNYNHALGHLSSNAKLQAHWADKFIHVSDPSKVTTLLQSDQTDLGHLVAPDGMRLADRPLDMDGELDDGAEQKPIFGEPTCSCGSFQRQLSNLATFQSEIQGFKPWCIHLTWFNKYRELLCKRTEVRNASPSGTPDKCVAWWYAPPSDHISDGRFVLLHTKSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAAIKK
Ga0222714_100033977	F002738	N/A	MSIDTYGLTFDEYSEFFQKNIRVSAKLYLDTCNIMTAEGVGNADFKTILDLYQEAVYTTNDDCRRYQRTNNPEALKESTVEIFGITPTREELMAEIQSVNAKIDALTDYIANLVTVTSAGLNGIVDSFDAPVD
Ga0222714_100033978	F013517	N/A	MFESLCATVLPVLKDFLWAAAGMLLTYMINKIQAQFNTI
Ga0222714_100033979	F001018	N/A	MSQITQTKLEDLSVIKLYEHYGALERSLPLLTPESQELAKAELESCASLRSEKVDRIYYAMASHEDALERIKKEGDLVAQAKRHHESQLNQLKNLVSWLRRALPLDSNRIQGKNYEFVLSKKKELTVEITSDPEFWHTDERAKYCIQQEVTTTKTIVVRSMSGDVLSERTEPKTKLETLPNLDAIRDAYQNGEHLPQGIKVEQQYSIRKNRLFSSKRMEAQAPEYHGEFLPEPDSAD