Scaffold Ga0222714_10001389

Overview

Basic Information

• Taxon OID: 3300021961
• Scaffold ID: Ga0222714_10001389
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27290
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (32.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.0516
  • Long. (^o): -121.88
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F014605	Metagenome / Metatranscriptome	261	N
F034147	Metagenome / Metatranscriptome	175	Y
F044503	Metagenome	154	Y
F048316	Metagenome / Metatranscriptome	148	Y
F088879	Metagenome / Metatranscriptome	109	Y
F093880	Metagenome / Metatranscriptome	106	N
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222714_1000138913	F005529	N/A	MAKGLPITKTDYSLEIRYRLRDGQWSPWSNKGKGKFETIEIVQRQIRTLASAYQLREKEVRFEWNGKLCDFTGQVTNEVITLK
Ga0222714_1000138926	F099147	N/A	MIKLLVDLEPFQKGEILSVGKTYDAYLVDKGLAVWIKVDKQDFKKK
Ga0222714_1000138930	F088879	AGGA	MREISTDIRIAVINAISPLTLSGVTLPVYDTELPPGINPANYQNSAAYVLITDQNEAETTNNDCTIRQNATFQINIITKFPQGSGGKKLSENISNAIQQKMTLQYLNLPVDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS
Ga0222714_1000138932	F034147	N/A	MAKYHVAPYKEGEIYFYPNLGALANFEDFTGKSLSEVFQSGKMPKLDLIYALLIECHKVASIRKSTNPIALDELKIWVDGKDVINLFNNVLADLLQELGIGENEEKKT
Ga0222714_1000138938	F014605	N/A	MIVNLAIALTDIEGNKITNESGEFMYLSKMVGNALFAAEEKEDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK
Ga0222714_1000138941	F048316	AGG	MRRFFSWSKGFLSENGEASSKRLVGVISAITLSYTLIRNQNEPLIYSVAALSAAALGITAAEKIFKKPNNEDKS
Ga0222714_100013895	F044503	N/A	MRRRNLTEYEKELIFEMWQDRTPTKVIAIELGASYACIYFHLKKRNLVG
Ga0222714_100013897	F093880	GGTGG	MELKDIQALNELNRDIWAMIVQAQKSKNWALIEINLKRLFALQKKYINLINLQDYEIKGTKLLLQDEIRVRNQFEKQWFKDVAQRSGSYQNLKDNIDKYFVE