Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10029694 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10029694 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3671
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3671

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F024204	Metagenome	207	N
F067119	Metagenome	126	Y
F076030	Metagenome / Metatranscriptome	118	N
F079942	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1002969412	F076030	N/A	MDKKLPKKGTPGRKKIHFTEEQLLEAERLAGLGFSEESLCKAVFGCSVSTLQRRKKEFNNIEQYIRRGKIKSITEVSSALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVENNINLSDIISSANARIIDHKPDALAHDAPSLDIKQINKATKS
Ga0222718_100296942	F079942	GGGGG	MSIVYVVIDEFHGIIDDINVYRNKPKNLKAISEDEKQRCFTLEIKESNNE
Ga0222718_100296943	F004343	GGGGG	MTQHREMIEEARRLLNSERENIPSMSKNFGKDYWLLTYPCGKIVKTYEDKRKNDVIIQESYNGGKL
Ga0222718_100296944	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPQKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES
Ga0222718_100296945	F024204	AGGGGG	MKNYSYLEILEDGIEVCASCGGANINANRNIDDQDNTKPQDHCFNCDYAEGITLCMPNDLYFYQEAKETLNKINRGEL
Ga0222718_100296946	F008882	GAGG	MSVTKYNFNKPKINRQELELLNWFLAHTDDNPLINPEALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0222718_100296949	F067119	AGGAGG	MSNAKIKFSIEGSKDNPIYEAVDVHPERWNGWLCPIVTIETALKIAEDIFDKNDLANNDPYHDIHGAITEARENLENTIDVGCGLIWDEVEEVKEVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10029694

Overview

Ecosystem & Geography

Associated Families

Sequences