Scaffold Ga0222717_10000673

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000673
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29076
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023952	Metagenome / Metatranscriptome	208	N
F024118	Metagenome / Metatranscriptome	207	Y
F070132	Metagenome / Metatranscriptome	123	N
F104957	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000067322	F104957	N/A	MKVSQAIWDGLKKQIEHYTEQDDNITDVTITYQVKASAERNFLKLTVKQ
Ga0222717_1000067328	F024118	N/A	MKQLIKKLLSAMASVPTDKLLHFFYGSIIATPLVIWGSTIEAISLMIFVSIGKEIIDTKMRYSPVSGLDAIFTFLPTLLLLAAKLL
Ga0222717_1000067334	F070132	N/A	MITNFSEQTTNELLTQYQFRVEALQNKIEELKAVLEINNLI
Ga0222717_1000067343	F023952	N/A	MANEIYLKSWWGKGACNDVGWGIVYQQYAGCSDIPALILDLQARADYFENEICTTATLTAIENIQ