NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104957

Metagenome / Metatranscriptome Family F104957

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104957
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 49 residues
Representative Sequence MKVSNAVWDGLKKQIEHFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ
Number of Associated Samples 71
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 15.00 %
% of genes near scaffold ends (potentially truncated) 21.00 %
% of genes from short scaffolds (< 2000 bps) 73.00 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(79.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(71.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.57%    β-sheet: 20.41%    Coil/Unstructured: 51.02%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF027395_3_exonuc_N 28.00
PF02195ParBc 4.00
PF08299Bac_DnaA_C 4.00
PF13481AAA_25 3.00
PF08291Peptidase_M15_3 1.00
PF01555N6_N4_Mtase 1.00
PF05766NinG 1.00
PF02675AdoMet_dc 1.00
PF05063MT-A70 1.00
PF12518DUF3721 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 28.00
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 4.00
COG4725N6-adenosine-specific RNA methylase IME4Translation, ribosomal structure and biogenesis [J] 2.00
COG0863DNA modification methylaseReplication, recombination and repair [L] 1.00
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 1.00
COG1586S-adenosylmethionine decarboxylaseAmino acid transport and metabolism [E] 1.00
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.00 %
All OrganismsrootAll Organisms23.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10007916Not Available7150Open in IMG/M
3300000101|DelMOSum2010_c10279875Not Available509Open in IMG/M
3300000115|DelMOSum2011_c10078295Not Available1159Open in IMG/M
3300000116|DelMOSpr2010_c10027497All Organisms → Viruses → Predicted Viral2690Open in IMG/M
3300000116|DelMOSpr2010_c10030763Not Available2512Open in IMG/M
3300000116|DelMOSpr2010_c10036225All Organisms → Viruses → Predicted Viral2263Open in IMG/M
3300000121|TDF_OR_ARG04_113mDRAFT_c1015564Not Available912Open in IMG/M
3300000121|TDF_OR_ARG04_113mDRAFT_c1017228Not Available858Open in IMG/M
3300000265|LP_A_09_P04_10DRAFT_1015220All Organisms → cellular organisms → Bacteria1536Open in IMG/M
3300003542|FS900DNA_10979220Not Available569Open in IMG/M
3300005601|Ga0070722_10419503Not Available591Open in IMG/M
3300005612|Ga0070723_10375356Not Available684Open in IMG/M
3300006029|Ga0075466_1067261Not Available1021Open in IMG/M
3300006752|Ga0098048_1003239Not Available6654Open in IMG/M
3300006793|Ga0098055_1075164All Organisms → Viruses → Predicted Viral1334Open in IMG/M
3300006793|Ga0098055_1094093Not Available1174Open in IMG/M
3300006793|Ga0098055_1132087Not Available967Open in IMG/M
3300006793|Ga0098055_1152333Not Available889Open in IMG/M
3300006793|Ga0098055_1201857Not Available755Open in IMG/M
3300006803|Ga0075467_10636460Not Available544Open in IMG/M
3300006810|Ga0070754_10065065All Organisms → Viruses → Predicted Viral1879Open in IMG/M
3300006920|Ga0070748_1131145Not Available940Open in IMG/M
3300006920|Ga0070748_1132891Not Available932Open in IMG/M
3300006920|Ga0070748_1314318Not Available556Open in IMG/M
3300006925|Ga0098050_1170971Not Available545Open in IMG/M
3300007229|Ga0075468_10224306Not Available540Open in IMG/M
3300007276|Ga0070747_1035612Not Available1953Open in IMG/M
3300007276|Ga0070747_1059416All Organisms → Viruses → Predicted Viral1453Open in IMG/M
3300007276|Ga0070747_1063811All Organisms → Viruses → Predicted Viral1395Open in IMG/M
3300007276|Ga0070747_1190820Not Available725Open in IMG/M
3300007540|Ga0099847_1015503All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2503Open in IMG/M
3300008470|Ga0115371_11019955All Organisms → Viruses → Predicted Viral1530Open in IMG/M
3300008651|Ga0103623_1002144Not Available1352Open in IMG/M
3300009136|Ga0118735_10348413Not Available518Open in IMG/M
3300009428|Ga0114915_1001339Not Available10680Open in IMG/M
3300009433|Ga0115545_1210619Not Available660Open in IMG/M
3300010149|Ga0098049_1028064All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1836Open in IMG/M
3300010392|Ga0118731_115404423All Organisms → Viruses → Predicted Viral2122Open in IMG/M
3300017708|Ga0181369_1098538Not Available609Open in IMG/M
3300017714|Ga0181412_1002267Not Available7016Open in IMG/M
3300017714|Ga0181412_1037941Not Available1267Open in IMG/M
3300017729|Ga0181396_1000309Not Available11063Open in IMG/M
3300017735|Ga0181431_1000076Not Available31332Open in IMG/M
3300017742|Ga0181399_1059351Not Available985Open in IMG/M
3300017763|Ga0181410_1020943All Organisms → Viruses → Predicted Viral2154Open in IMG/M
3300017763|Ga0181410_1030244Not Available1739Open in IMG/M
3300019756|Ga0194023_1112379Not Available553Open in IMG/M
3300020317|Ga0211688_1000656Not Available13933Open in IMG/M
3300020347|Ga0211504_1008691Not Available3162Open in IMG/M
3300020469|Ga0211577_10250901Not Available1140Open in IMG/M
3300021371|Ga0213863_10000489Not Available30382Open in IMG/M
3300021389|Ga0213868_10363153Not Available811Open in IMG/M
3300021957|Ga0222717_10000673Not Available29076Open in IMG/M
3300021957|Ga0222717_10216397Not Available1129Open in IMG/M
3300021959|Ga0222716_10535276All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.652Open in IMG/M
3300021960|Ga0222715_10042858Not Available3173Open in IMG/M
3300022061|Ga0212023_1003255All Organisms → Viruses → Predicted Viral1809Open in IMG/M
3300022061|Ga0212023_1024858Not Available820Open in IMG/M
3300022164|Ga0212022_1010465Not Available1296Open in IMG/M
3300022164|Ga0212022_1011261All Organisms → Viruses → Predicted Viral1260Open in IMG/M
3300022164|Ga0212022_1052307Not Available631Open in IMG/M
3300022178|Ga0196887_1031786Not Available1465Open in IMG/M
3300022206|Ga0224499_10193222All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.693Open in IMG/M
(restricted) 3300023210|Ga0233412_10349697Not Available657Open in IMG/M
(restricted) 3300023210|Ga0233412_10388899Not Available623Open in IMG/M
(restricted) 3300023210|Ga0233412_10470991Not Available566Open in IMG/M
(restricted) 3300023276|Ga0233410_10299573Not Available525Open in IMG/M
(restricted) 3300024059|Ga0255040_10015691All Organisms → Viruses → Predicted Viral2560Open in IMG/M
(restricted) 3300024255|Ga0233438_10211963Not Available788Open in IMG/M
(restricted) 3300024264|Ga0233444_10007754Not Available9227Open in IMG/M
(restricted) 3300024518|Ga0255048_10381589Not Available682Open in IMG/M
3300025108|Ga0208793_1011131Not Available3519Open in IMG/M
3300025108|Ga0208793_1088902Not Available879Open in IMG/M
3300025108|Ga0208793_1090254Not Available871Open in IMG/M
3300025120|Ga0209535_1000887Not Available20755Open in IMG/M
3300025276|Ga0208814_1000332Not Available31760Open in IMG/M
3300025276|Ga0208814_1002313Not Available8290Open in IMG/M
3300025276|Ga0208814_1003483Not Available6475Open in IMG/M
3300025276|Ga0208814_1128872Not Available596Open in IMG/M
3300025508|Ga0208148_1085577Not Available703Open in IMG/M
3300025508|Ga0208148_1088289All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.687Open in IMG/M
3300025543|Ga0208303_1015724All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2234Open in IMG/M
3300025570|Ga0208660_1100562Not Available636Open in IMG/M
3300025645|Ga0208643_1100324Not Available794Open in IMG/M
3300025652|Ga0208134_1049484All Organisms → Viruses → Predicted Viral1344Open in IMG/M
3300027506|Ga0208973_1085895All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.733Open in IMG/M
(restricted) 3300027861|Ga0233415_10651105Not Available514Open in IMG/M
(restricted) 3300028045|Ga0233414_10076043Not Available1420Open in IMG/M
3300028196|Ga0257114_1159319All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300028287|Ga0257126_1067244Not Available1400Open in IMG/M
3300031519|Ga0307488_10090217Not Available2258Open in IMG/M
3300031519|Ga0307488_10179707Not Available1453Open in IMG/M
3300031519|Ga0307488_10519544Not Available707Open in IMG/M
3300031569|Ga0307489_10850370Not Available645Open in IMG/M
3300031602|Ga0307993_1001776Not Available6908Open in IMG/M
3300031628|Ga0308014_1100635All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium672Open in IMG/M
3300031629|Ga0307985_10403723Not Available527Open in IMG/M
3300031631|Ga0307987_1089959Not Available846Open in IMG/M
3300031658|Ga0307984_1054050Not Available1247Open in IMG/M
3300033742|Ga0314858_200291Not Available512Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous24.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater9.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine6.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean5.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine5.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine4.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.00%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment1.00%
North SeaEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000121Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3mEnvironmentalOpen in IMG/M
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300003542Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNAEnvironmentalOpen in IMG/M
3300005601Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300008651Microbial communities of saline water collected from the North Sea in Germany - HE327_13EnvironmentalOpen in IMG/M
3300009136Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsfEnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300020317Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300027506Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031569Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2EnvironmentalOpen in IMG/M
3300031602Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260EnvironmentalOpen in IMG/M
3300031628Marine microbial communities from water near the shore, Antarctic Ocean - #229EnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031631Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_10007916203300000101MarineMKVSEAVWNGLKKQIEQFTEQDQEITDITITYQVRPSVNKNYLKLTVKQ*
DelMOSum2010_1027987513300000101MarineMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
DelMOSum2011_1007829553300000115MarineMKVSNAVWNGLKKQIEHFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
DelMOSpr2010_1002749783300000116MarineMKVSKAVWDGLKKQIEHFTEQDQEITDITITYQVRPAQNKNYLKLTVKQ*
DelMOSpr2010_1003076323300000116MarineMKVNQAVWDGLKKQIEHHTEQDNNITDVTITYQVKASVERNFLKLTVKQ*
DelMOSpr2010_1003622513300000116MarineNYLKKMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
TDF_OR_ARG04_113mDRAFT_101556413300000121MarineMIVSQAIWDGLKRQIEHHTEQDSNITDVTITYQVKPSAERNFLKLTVKQ*
TDF_OR_ARG04_113mDRAFT_101722823300000121MarineMYFGFYLKKKMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKPSAERNFLKLTVKQ*
LP_A_09_P04_10DRAFT_101522053300000265MarineMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAXNKNYLKLTVKQ*
FS900DNA_1097922013300003542Diffuse Hydrothermal Flow Volcanic VentMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAENKNYLKLTVKQ*
Ga0070722_1041950323300005601Marine SedimentMYFGFYLKKKMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
Ga0070723_1037535613300005612Marine SedimentKKMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
Ga0075466_106726113300006029AqueousMYFGFYLKKKMKVNQAVWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
Ga0098048_100323993300006752MarineMKVSNAVWNGLKEQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0098055_107516433300006793MarineMKVSDAVWNGLKKQIEHFTAQDKEITDVTITYQVKPAKNKNYLKLTVKQ*
Ga0098055_109409333300006793MarineMKVSNAVWNGLKEQIEHFTEVDNEITDITITYQVKPSKNKNYLKLTVKQ*
Ga0098055_113208723300006793MarineMKVSEAVWNGLKEQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0098055_115233343300006793MarineMKVSNAVWNGLKEQIEHFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0098055_120185713300006793MarineNNKYIQMKVSNAVWKGLKEQIEHFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ*
Ga0075467_1063646023300006803AqueousMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAKNKNYLKLTVKQ*
Ga0070754_1006506573300006810AqueousMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0070748_113114533300006920AqueousMKVSQAIWDGLKKQIEYHTEQDNNITDVTITYQVKASAERNFLKLTVKQ*
Ga0070748_113289113300006920AqueousTNKLIQMKVSEAVWNGLKKQIEQFTEQDQEITDITITYQVRPAVNKNYLKLTVKQ*
Ga0070748_131431833300006920AqueousYFFLYNNKFIQMKVSNAVWDGLKEQIEHFTEMDNEITDITITYQVKPSKNKNYLKLTVKQ
Ga0098050_117097123300006925MarineMKVSNAVWKGLKEQIEHFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ*
Ga0075468_1022430633300007229AqueousMKVNQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
Ga0070747_103561243300007276AqueousMKVSNAVWDGLKEQIEHFTERDNEITDITITYQVKPSKNKNYLKLTVKQ*
Ga0070747_105941633300007276AqueousMKVSNAVWDGLKEQIEHFTEMDNEITDITITYQVKPSKNKNYLKLTVKQ*
Ga0070747_106381133300007276AqueousMKVSEAVWNGLKKQIEQFTEQDQEITDITITYQVRPAVNKNYLKLTVKQ*
Ga0070747_119082033300007276AqueousMKVNNAVWNGLKEQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0099847_101550363300007540AqueousMKVSEAVWNGLKKQIEQFTEQDKEITDITITYQVRPSVNKNYLKLTVKQ*
Ga0115371_1101995543300008470SedimentMKVSQAVWDGLKRQIETHTEEDKNITDVTITYQVKPSAQRNYLKLTVTQGGVTLT*
Ga0103623_100214433300008651North SeaMKVNQAIWDGLKKQIEHYTEQDKEITDVTITYQVKPSAERNFLKLTVKQ*
Ga0118735_1034841323300009136Marine SedimentMKVNQAVWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ*
Ga0114915_1001339203300009428Deep OceanMIVSQAIWDGLKNQIEHHTKQDKEITDVTITYQVKPSAERNFLKLTVKQ*
Ga0115545_121061943300009433Pelagic MarineMKVSEAVWNGLKEQIEQFTEQDKEITDITITYQVRPSVNKNYLKLTVKQ*
Ga0098049_102806453300010149MarineMKVSEAVWNGLKEQIEQFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ*
Ga0118731_11540442333300010392MarineMKVSEAVWNGLKKQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ*
Ga0181369_109853823300017708MarineMKVSNAVWDGLKKQIEHFTEQDKEITDITITYQVRQAKNKNYLKLTVKQ
Ga0181412_100226743300017714SeawaterMKVSDAIWNGLKKQIEHFTEQDNEITDITITYQVKPAKNKNYLKLTVKQ
Ga0181412_103794113300017714SeawaterMKVSNAVWDGLKKQIEHFTEQDKEITDITITYQVRPAKSKNYLKLTVKQ
Ga0181396_1000309193300017729SeawaterMKVNDAVWKGLKKQIEHYTELDNEITDITINYQVKRSKDKNYLKLTVKQ
Ga0181431_100007693300017735SeawaterMKVSDAVWNGLKKQIEHFTAQDKEITDVTITYQVKPSKNKNYLKLTVKQ
Ga0181399_105935163300017742SeawaterMKVSNAVWDGLKKQIEHFTEQDQEITDITITYQVRPAKNKNYLKLTVK
Ga0181410_102094313300017763SeawaterMKVSDAIWNGLKKQIEHFTEQDNEITDITITYQVKPAKNKN
Ga0181410_103024453300017763SeawaterMKVSNAVWDGLKKQIEHFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ
Ga0194023_111237913300019756FreshwaterMKVSEAVWNGLKKQIEQFTEQDQEITDITITYQVRPSVNKNYLKLTVKQ
Ga0211688_1000656223300020317MarineMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVRPSKERNFLKLTVKQ
Ga0211504_100869193300020347MarineMKVSEAVWNGLKEQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ
Ga0211577_1025090133300020469MarineIWNGLKKQIEHFTEQDNEITDITITYQVKPAKNKNYLKLTVKQ
Ga0213863_10000489233300021371SeawaterMKVSKAVWDGLKEQIEHFTEQDKEITDITITYQVRPAENKNYLKLTVKQ
Ga0213868_1036315343300021389SeawaterMKVSEAVWNGLKKQIEQFTEQDQEITDITITYQVRPAVNKNYLKLTVKQ
Ga0222717_10000673223300021957Estuarine WaterMKVSQAIWDGLKKQIEHYTEQDDNITDVTITYQVKASAERNFLKLTVKQ
Ga0222717_1021639713300021957Estuarine WaterMKVSNAVWKGLKEQIEHFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ
Ga0222716_1053527613300021959Estuarine WaterMYFGFYLKKKKKMKVSQAIWDGLKKQIEHYTEQDDNITDVTITYQVKASAERNFLKLTVK
Ga0222715_1004285813300021960Estuarine WaterMKVSNAVWNGLKEQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ
Ga0212023_100325583300022061AqueousMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAKNKNYLKLTVKQ
Ga0212023_102485833300022061AqueousMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ
Ga0212022_101046513300022164AqueousMKVSNAVWKGLKEQIEHFTNQDKEITDITITYQVRPAQNKNY
Ga0212022_101126113300022164AqueousKYIQMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAKNKNYLKLTVKQ
Ga0212022_105230723300022164AqueousMYFGFYLKKKMKVSQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ
Ga0196887_103178633300022178AqueousMKVSQAIWDGLKKQIEYHTEQDNNITDVTITYQVKASAERNFLKLTVKQ
Ga0224499_1019322213300022206SedimentMYFGFYLKKKMKVSQAIWDGLKKQIEYHTEQDDNITDVTITYQVKASAERNFLKLTVKQ
(restricted) Ga0233412_1034969713300023210SeawaterMKVSKAVWDGLKKQIEHFTEQDQEITDITITYQVRPAKNKNYLKLTVK
(restricted) Ga0233412_1038889923300023210SeawaterMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAQNKNYLKLTVKQ
(restricted) Ga0233412_1047099123300023210SeawaterMYFGFYLKKKMKVNQAIWDGLKKQIEHYTEQDNNITDVTITYQVKASAERNFLKLTVKQ
(restricted) Ga0233410_1029957323300023276SeawaterMKVSKAVWDGLKKQIEHFTEQDQEITDITITYQVRPAQNKNYLKLTVKQ
(restricted) Ga0255040_1001569193300024059SeawaterMKVSNAVWNGLKEQIEQFTEQDKEITDITITYQVRP
(restricted) Ga0233438_1021196323300024255SeawaterMKVSDAVWNALKKQIEQFTEQDKEITDITITYQVRPAINKNYLKLTVKQ
(restricted) Ga0233444_10007754193300024264SeawaterMKVSNAVWNGLKEQIEHFTEMDNEITDITITYQVKPSKNKNYLKLTVKQ
(restricted) Ga0255048_1038158933300024518SeawaterMKVSNAVWNGLKKQIEQFTEQDKEITDITITYQVRPAQNKNYLKLTVKQ
Ga0208793_101113123300025108MarineMKVSNAVWKGLKEQIEHFTEQDKEITDITITYQVRPAKNKNYLKLTVKQ
Ga0208793_108890233300025108MarineMKVSDAVWNGLKKQIEHFTAQDKEITDVTITYQVKPAKNKNYLKLTVKQ
Ga0208793_109025433300025108MarineMKVSNAVWNGLKEQIEHFTEVDNEITDITITYQVKPSKNKNYLKLTVKQ
Ga0209535_1000887313300025120MarineMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAENKNYLKLTVKQ
Ga0208814_1000332203300025276Deep OceanMIVSQAIWDGLKNQIEHHTKQDKEITDVTITYQVKPSAERNFLKLTVKQ
Ga0208814_1002313163300025276Deep OceanMKVSQAIWDGLKRQIEHHTEQDKEITDVTITYQVKPSAERNFLKLTVKQ
Ga0208814_100348313300025276Deep OceanMKVSKAIWDGLKKQIEYHTEQDKEITDVTITYQVKPSAERN
Ga0208814_112887213300025276Deep OceanAIWDGLKKQIEYHTEQDKEITDVTITYQVKPSAERNFLKLTVKQ
Ga0208148_108557723300025508AqueousVNQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ
Ga0208148_108828943300025508AqueousMYFGFYLKKKMKVNQAVWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ
Ga0208303_101572453300025543AqueousMKVSEAVWNGLKKQIEQFTEQDKEITDITITYQVRPSVNKNYLKLTVKQ
Ga0208660_110056213300025570AqueousMYFGFYLKKKMKVNQAIWDGLKKQIEYHTEQDKEITDVTITYQVKASAERNFLKLTVKQ
Ga0208643_110032413300025645AqueousMKVSQAIWDGLKKQIEYHTEQDNNITDVTITYQVKASAERN
Ga0208134_104948453300025652AqueousMKVSNAVWDGLKEQIEHFTEMDNEITDITITYQVKPSKNKNYLKLTVKQ
Ga0208973_108589533300027506MarineMYFGFYLKKKKKMKVSQAIWDGLKKQIEYHTEQDDNITDVTITYQVKASAERNFLKLTVK
(restricted) Ga0233415_1065110513300027861SeawaterNKHIQMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAKNKNYLKLTVKQ
(restricted) Ga0233414_1007604333300028045SeawaterMKVSNAVWDGLKKQIEHFTEQDQEITDITITYQVRPAQNKNYLKLTVKQ
Ga0257114_115931943300028196MarineMKVSNAVWNGLKKQIEQFTEQDKEITDITITYQVRPAQNKNYLKLT
Ga0257126_106724423300028287MarineMKVNDAVWKGLKKQIEHYTEHDNEITDITINYQVKTSKEKNYLKLTVKQ
Ga0307488_1009021743300031519Sackhole BrineLKVNQAVWDGLKRQIEHHTEQDNNITDVTITYQVKASAERNFLKLTVKQ
Ga0307488_1017970733300031519Sackhole BrineMKVNQAVWDGLKRQIEHHTEQDNNITDVTITYQVKASAERNFLKLTVKQ
Ga0307488_1051954443300031519Sackhole BrineMKVSKAVWDGLKEQIEHFTNQDKEITDITITYQVRPAENKN
Ga0307489_1085037013300031569Sackhole BrineMKVNQAAWDDLKKLIEHYTDQDNNITDITINYQVK
Ga0307993_1001776133300031602MarineLKVSQAIWDGLKRQIETHTEADENITDVTITYQIKSSVQRNYLKLTVKQGV
Ga0308014_110063533300031628MarineWDGLKKQIEYHTEQDKEITDVTITYQVKPSAERNFLKLTVKQ
Ga0307985_1040372333300031629MarineLKVSQAIWDGLKRQIETLTEDENITDIIINYQVKPSVQRNYLKLTVKQGV
Ga0307987_108995923300031631MarineMKVSQAIWDGLKRQIETLTEDENITDVIINYQVKPSVQKNYLKLTVKQGV
Ga0307984_105405043300031658MarineMKVSQAIWDGLKRQIETLTEDENITDVIINYQVKPSVQRNYLKLTVKQGV
Ga0314858_200291_282_4313300033742Sea-Ice BrineMKVNQAVWDGLKRQIEHHTEQDSNITDVTITYQVKASAERNFLKLTVKQ


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