Scaffold Ga0222717_10000230

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10000230
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49036
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (83.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008724	Metagenome / Metatranscriptome	329	Y
F013465	Metagenome	271	Y
F025380	Metagenome	202	Y
F032035	Metagenome	181	Y
F046004	Metagenome / Metatranscriptome	152	N
F086178	Metagenome	111	N
F092737	Metagenome	107	N
F099858	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1000023035	F008724	GAGG	MSKMNNWMMDIEDFCNGYFFDAPVPNDFSVDEIVEDVGMYFKSNEASKYAKQYLTEQMGE
Ga0222717_1000023054	F046004	GGAG	MKKLMIGVALATCISSVAMAEEKKVSSVLPKIDMSFVTDTERNVTQETTSTKFGVVAGIKGFDLSVKPSFSWDDSEISNVEFWGGYTFDVNESFGITPYGEVNFNNDFETADKIVGVKTEYKF
Ga0222717_1000023075	F025380	GAGG	MELGTKIIGDFGGYTELWNGEVVTISPISSCPALTPEVKIKWDDGSYSWCELSFINANKGIGYFTEDGYYE
Ga0222717_1000023083	F092737	GAGG	MTALWYKWYIHLREEGYSIGTALVAGWWNASINAQYWTEGPKKWVDNRPDRYYRG
Ga0222717_1000023085	F032035	GAGG	MSRIEPNTYSYVTKDGYEHMAVMMEEGKYKGVAWGYTKINLPKTEDGRAVLSFEFEILDNAKLEFEDIDEEEFMNLMGDILADQIDEQLETGRVKFA
Ga0222717_1000023087	F099858	AGGA	MTDITDINPIVNVGTDKNPMYVLDATWMTVLYEKITGKDFKGDDDYLEFTDRFVKEYNEGGFDTTLAIKRMM
Ga0222717_1000023088	F013465	GAGG	MNEQEYRDIYAEYCMESGERMTDRGFREFKAWRKRVEELFEKREDSS
Ga0222717_1000023089	F086178	GGAG	MTTLAAKGYTTDGVPVFLWAYGNYKYEVEVKKLNFTESEVFDASFNEAVNKFEDRAINGVEFF