Scaffold Ga0214481_106776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214481_106776

Scaffold Ga0214481_106776

Overview

Basic Information
Taxon OID	3300021916 Open in IMG/M
Scaffold ID	Ga0214481_106776 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellG10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1008
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.746	Long. (^o)	-122.0257	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100378	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214481_1067761	F100378	N/A	DEYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGLVSLEKSGFSRLRGVAVL

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