NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214477_107251

Scaffold Ga0214477_107251


Overview

Basic Information
Taxon OID3300021915 Open in IMG/M
Scaffold IDGa0214477_107251 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100378Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214477_1072511F100378N/AMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTDESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072512F100378N/AMSDAYAIVDIPKSLPIQGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072513F100378N/AMSDAYAIVDIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
Ga0214477_1072514F100378N/ADIPKSLPIHGMAFTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
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Institute for Fundamental Biomedical Research
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