NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214477_105478

Scaffold Ga0214477_105478


Overview

Basic Information
Taxon OID3300021915 Open in IMG/M
Scaffold IDGa0214477_105478 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1651
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100378Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214477_1054781F100378N/AMSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL
Ga0214477_1054782F100378N/AMSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054783F100378N/AMSDAYAIVHIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054784F100378N/AMSDAYVIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL
Ga0214477_1054785F100378N/AMSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214477_1054786F100378N/AMSDAYAIVHIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPPWGVAVLL

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