NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214477_105433

Scaffold Ga0214477_105433


Overview

Basic Information
Taxon OID3300021915 Open in IMG/M
Scaffold IDGa0214477_105433 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100378Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214477_1054331F100378N/AIVDIPKSLPIHGMALISTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL
Ga0214477_1054332F100378N/AMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLL
Ga0214477_1054333F100378N/AMSDAYAIVDIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKSGFSPLQGVAVLLQLHHE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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