Scaffold Ga0194048_10002662

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10002662
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8831
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F011299	Metagenome / Metatranscriptome	292	Y
F013527	Metagenome / Metatranscriptome	270	Y
F015208	Metagenome / Metatranscriptome	256	Y
F017995	Metagenome / Metatranscriptome	237	Y
F024319	Metagenome / Metatranscriptome	206	Y
F074868	Metagenome / Metatranscriptome	119	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100026621	F024319	AGG	MTNRIWESLNDYTLESDAKRLGYVACSAGCGRVTAWSLCTMCGGNYATHNLVGK
Ga0194048_1000266210	F006744	AGGA	MNLDEFKAHVLATRQASKTEAMSVLSATISKSTTTEGDK
Ga0194048_1000266212	F017995	GGGGG	MSKIKEYIEIIAANCDECGGAGFVFFGDENNYDVEPCDCIADVSDELTVDWVNE
Ga0194048_1000266213	F015208	N/A	MYKITCTYDESPTPYVELEYADALQAFEEFAKFVDWGFADKYSTVNLSMPTGKMYTKIFYREGRKVITK
Ga0194048_1000266214	F011299	AGG	MMTRKHFEATAEILKYGSNKMHPALFSKMVNDFAVMFANENPNFNVNKFHEASGYHVPQF
Ga0194048_1000266221	F004051	AGGA	MTIDNKVYEVGDLFTTLKSHKTGIIKEIIPNASGSVRVLLEMPSKETRWTTVKVAE
Ga0194048_1000266227	F000980	N/A	MTRYQKYTWVCTGDCDALIEYTIKDGYGWPGGVMQLTCPCNSKCTLVSVEDATIPYTDTPLTKEEPMETETPAVIVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANMYVSKISTVKDIITEAYEDSDDKETLRAIAEALDIELVKEVQFTASIEVSGTYSFNVLESDYDLDLESEVTDALYADSQNGNITIDDTEVCNVRES
Ga0194048_100026625	F085708	GAG	MNRLLTSLVQVALLVPALYMGRMMWREIVADFREWDKSH
Ga0194048_100026627	F074868	N/A	MTTLEKTNIGLALGISGALENRILHDWNNGGAKSAYGLSVWQRKALLKILISESPKCFCVNCLGVK
Ga0194048_100026628	F013527	AGGAG	MKTFEFLTYINVEAESYDEAIDVFQFQLKYGMNKDNVYCADIKELVSE
Ga0194048_100026629	F001562	GAG	MKTQFEKDLEIKESFIDLLNDVYPIVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMEDES