Scaffold Ga0194048_10000420

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10000420
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20590
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (70.18%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F011487	Metagenome / Metatranscriptome	290	Y
F017133	Metagenome / Metatranscriptome	242	Y
F023106	Metagenome / Metatranscriptome	211	Y
F026557	Metagenome / Metatranscriptome	197	Y
F035304	Metagenome / Metatranscriptome	172	Y
F071231	Metagenome / Metatranscriptome	122	N
F087194	Metagenome / Metatranscriptome	110	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000042014	F023106	GGA	MRISRRVTEEEKVAMKLGNTISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYASNGF
Ga0194048_1000042020	F035304	N/A	MDLKTLQEYIKITILSMEQDLENEDGADSIVPYLEGAIHISKHYLEYINER
Ga0194048_1000042032	F011487	AGGAG	MGNIADEFYDEYYATTCPECKENAVDAYEEKCTHCLLEEMSVTYNEDIALEMSLGLDY
Ga0194048_1000042033	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKSYNRRKCQSELLQLKNNEKGE
Ga0194048_1000042037	F000447	GGCGG	MGYVEIFRIDNEGAGWIDLAQANSDELFNLELGLFNEGALFTTKEAE
Ga0194048_1000042039	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEILFADLVDEFSLMFESDNERFDANRFAIACYKELSNV
Ga0194048_1000042041	F026557	AGG	MINSVLTIPCEECNSTGLLFFGNDNDFDVETCQCDFGTEQDLQQFNN
Ga0194048_1000042045	F017133	AGG	MSIWTKFATVSDYPKGMMNLCPCGQVVLAPAKYHEGFAWWDNPNKCKELFEGVTK
Ga0194048_1000042047	F003965	AGGTGG	MTTLTKCLEHIPNLAISEYCDEQFTFCEICEQNIERWYNDTDPERLPMWSDWKVSN
Ga0194048_1000042049	F087194	GAGG	MTLDEYKKYVEAQRLSSLGLALEALTKSKSMQESENK
Ga0194048_1000042050	F093845	GAG	MINVTLTTTGGTTRGMEFDTKEHVHEFIELMGSTLHQGVAVCIDAPIIGIHNGWIQGKMK