Scaffold Ga0194048_10000104

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10000104
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35430
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (73.77%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F004517	Metagenome / Metatranscriptome	434	Y
F007848	Metagenome	343	Y
F011648	Metagenome / Metatranscriptome	288	Y
F017467	Metagenome	240	Y
F022156	Metagenome / Metatranscriptome	215	Y
F027399	Metagenome	194	Y
F036031	Metagenome	171	Y
F040482	Metagenome / Metatranscriptome	161	N
F042791	Metagenome	157	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000010410	F027399	AGG	MNFTFTWILDKFGFQPKVETFDFPFTPTPKKVAKKTVKKATTRKPKAK
Ga0194048_1000010411	F036031	GAG	MNRIEINAITGENQVIELTAEEVTQAQFQYSEWLANQPTKEEQIAKLQAQIDELKG
Ga0194048_1000010427	F042791	AGG	MFQTAFQSNAFQVNAFQIYIPPTPTGQTGGDGFTREEWLRAQRLTKKIEARQRLLEKAIKDDNFARKQGIRDLVSPVAKVKQTKVQSKQEVKADIPLAATEDLQRSISYLERQKDNILAAVAYRKQQTLIQEQLIYMEAKRLEELDDEESVLILLH
Ga0194048_100001043	F007848	AGGAG	MKDFIGSCLLGALLGCMFAYGVPAKAQSYTMTNPQGYNMGTVQIQGNTAQFVNPMGYTTQTATIYPNQIVITSPSGYTQSVVGNAGYTVPMSPPSPPSPRVLQ
Ga0194048_1000010430	F001774	AGGAG	MALKLSVETQFGAPAPDAYARITNFFGTKDQIQVQVAIYYNEEARHSNMATVREDAHYIAIEDLKGDLIPAIYEVLKTFTQYEGAEDC
Ga0194048_1000010437	F004517	GGA	MKHMDRKYPKENALLREHKESTYEKNLVDRIARRKMIANKLKDLDKEVK
Ga0194048_1000010444	F065407	AGGAG	MFTFDEQYKQLEEVTERTKQMYEFWYNAVVSTLKDFYKTGK
Ga0194048_1000010450	F017467	N/A	LNPDNYLVSWYIAVAKKRGWPEVVRLLAQYPEKEERMKMLIKKRLGK
Ga0194048_1000010454	F040482	GGAG	MTWNLRLVNMCNPYEDYFEIREVYYDNMGKPVAHSRASIGGEDRLEVDRYIELAKLALDKPIIKFANNENTNKDN
Ga0194048_1000010457	F011648	AGGAG	MSEQEQDFNSFQEHLERIFKDLEDGVFITADEIGDLRYACGLPSPVRKNPVLKAVFDDFSTIFRSKQ
Ga0194048_100001049	F022156	GAG	MGDLDKEVVKEAIKEWLNEKVAEFGWFSLKTIGYALVALIGYLWLSTHGFQVPK