Scaffold Ga0210392_10003571

Overview

Basic Information

• Taxon OID: 3300021475
• Scaffold ID: Ga0210392_10003571
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8060
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210392_100035713	F077695	AGGAG	MADYNIGPGVAQAIADNGDEPRSDERYIILDEGHKVSLTFARDAQYFYYEEDGRVNRSPF
Ga0210392_100035714	F045919	N/A	VTPSDIYASRESTTYEIGYPSNINSTYGLMDSSGSALRAVLESYGQETSQSWLDFDTTYELVQGTPGMMSGAAWYHWVGIRGVDAGCIWVANSAPGYKGIYDHVSRDDFNRLGGFSVVWL
Ga0210392_100035716	F059390	GGA	MAITIGWLIAVVVLLIAILGLLGVVPLSQTVVFGLIAALAVARLI