Scaffold Ga0206685_10003871

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10003871
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4582
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F022416	Metagenome	214	Y
F037294	Metagenome / Metatranscriptome	168	Y
F041710	Metagenome	159	Y
F057671	Metagenome / Metatranscriptome	136	Y
F075974	Metagenome	118	Y
F092862	Metagenome	107	Y
F093707	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_1000387110	F092862	N/A	MENEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEER
Ga0206685_1000387111	F041710	AGG	MNINYYKQLKKNYQMKKKLIDEMVFDTKNDRWIFISDLKSGELIYNDKEVKVFTTDRGYTFYQTKWPRIQISNISWDRCKETIKDRQDNAEHYAYMDHLGDETMLEMYNNNHNNWTGD
Ga0206685_1000387112	F057671	N/A	MSVTKELDRISFDIHNQVLEYMYETIAKELEYSDLEDINDNKLHEYVMNQVINKFIQK
Ga0206685_1000387113	F093707	N/A	MKKTLRFVRIEDIRLPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0206685_1000387115	F075974	AGGA	MVKKLERGLYIIIFSAMSFFLGVFYTFYEIDQRLWNEELLKARDIETRYINYKQKKYYKKSDLDLIIFGEIK
Ga0206685_1000387116	F013818	N/A	MNSVKKYYEMKQDMVDKESLYLCSEIEKALERIISYDDGMLDDKLFTKIKKPAIKLLREWHL
Ga0206685_100038715	F037294	N/A	MSTKKFYWNEETLNHFKFNSNYQNKEEVIKEITEFIEIDCSLEENETEEMLINDLIKQVYNK
Ga0206685_100038716	F022416	N/A	MILIKVTNKGSLHFLMNDGRVGVSSTSGYVRINTKNTNHFTKDKKFYQINKVKKTLCLKYRGWYDTDLYDYKRILIPNPKKRYEFLLAFENKNC