Metagenome Family F093707

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093707
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVEKLEKLINKYE
Number of Associated Samples	75
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	28.30 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (79.245 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (64.151 % of family members)
Environment Ontology (ENVO)	Unclassified (93.396 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.792 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 2.38% Coil/Unstructured: 64.29%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00118	Cpn60_TCP1	0.94
PF13662	Toprim_4	0.94
PF00268	Ribonuc_red_sm	0.94
PF14743	DNA_ligase_OB_2	0.94
PF01068	DNA_ligase_A_M	0.94
PF00166	Cpn10	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	0.94
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
All Organisms	root	All Organisms	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
cellular organisms	root	All Organisms → cellular organisms	18.87 %
Viruses	superkingdom	All Organisms → Viruses	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.89 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.89 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.89 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.89 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.89 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001743\|JGI24515J20084_1011964	Not Available	784	Open in IMG/M
3300002514\|JGI25133J35611_10061290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1220	Open in IMG/M
3300002514\|JGI25133J35611_10115556	Not Available	772	Open in IMG/M
3300005427\|Ga0066851_10044439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1529	Open in IMG/M
3300005605\|Ga0066850_10201505	Not Available	720	Open in IMG/M
3300006736\|Ga0098033_1042819	Not Available	1343	Open in IMG/M
3300006736\|Ga0098033_1234951	Not Available	501	Open in IMG/M
3300006738\|Ga0098035_1038654	Not Available	1781	Open in IMG/M
3300006738\|Ga0098035_1063723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1324	Open in IMG/M
3300006738\|Ga0098035_1089145	Not Available	1083	Open in IMG/M
3300006738\|Ga0098035_1195972	Not Available	675	Open in IMG/M
3300006738\|Ga0098035_1203623	Not Available	660	Open in IMG/M
3300006750\|Ga0098058_1062697	Not Available	1035	Open in IMG/M
3300006750\|Ga0098058_1099676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300006751\|Ga0098040_1023819	Not Available	1984	Open in IMG/M
3300006751\|Ga0098040_1027196	Not Available	1837	Open in IMG/M
3300006751\|Ga0098040_1078031	Not Available	1009	Open in IMG/M
3300006752\|Ga0098048_1231994	Not Available	541	Open in IMG/M
3300006753\|Ga0098039_1197877	Not Available	681	Open in IMG/M
3300006754\|Ga0098044_1183954	Not Available	827	Open in IMG/M
3300006768\|Ga0098071_101170	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3400	Open in IMG/M
3300006789\|Ga0098054_1029140	Not Available	2165	Open in IMG/M
3300006789\|Ga0098054_1308523	Not Available	565	Open in IMG/M
3300006793\|Ga0098055_1049638	Not Available	1695	Open in IMG/M
3300006793\|Ga0098055_1264879	Not Available	645	Open in IMG/M
3300006923\|Ga0098053_1061276	Not Available	770	Open in IMG/M
3300006923\|Ga0098053_1064571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300006926\|Ga0098057_1155798	Not Available	557	Open in IMG/M
3300006928\|Ga0098041_1110354	Not Available	888	Open in IMG/M
3300006929\|Ga0098036_1023658	Not Available	1941	Open in IMG/M
3300007513\|Ga0105019_1071046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1989	Open in IMG/M
3300007963\|Ga0110931_1163946	Not Available	666	Open in IMG/M
3300008050\|Ga0098052_1147239	Not Available	934	Open in IMG/M
3300008050\|Ga0098052_1216514	Not Available	740	Open in IMG/M
3300008050\|Ga0098052_1231029	Not Available	711	Open in IMG/M
3300008051\|Ga0098062_1053393	Not Available	579	Open in IMG/M
3300008220\|Ga0114910_1003645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6542	Open in IMG/M
3300008952\|Ga0115651_1002411	Not Available	31068	Open in IMG/M
3300009129\|Ga0118728_1005633	Not Available	11259	Open in IMG/M
3300009414\|Ga0114909_1159665	Not Available	593	Open in IMG/M
3300009418\|Ga0114908_1083164	Not Available	1091	Open in IMG/M
3300009488\|Ga0114925_10635447	Not Available	758	Open in IMG/M
3300009488\|Ga0114925_10730998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300009528\|Ga0114920_10110732	Not Available	1763	Open in IMG/M
3300009602\|Ga0114900_1070915	Not Available	1011	Open in IMG/M
3300009603\|Ga0114911_1003094	Not Available	7314	Open in IMG/M
3300009605\|Ga0114906_1134817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300009620\|Ga0114912_1147912	Not Available	549	Open in IMG/M
3300010149\|Ga0098049_1052772	Not Available	1297	Open in IMG/M
3300010150\|Ga0098056_1228674	Not Available	618	Open in IMG/M
3300010153\|Ga0098059_1424218	Not Available	501	Open in IMG/M
3300010155\|Ga0098047_10120847	Not Available	1019	Open in IMG/M
3300010155\|Ga0098047_10364883	Not Available	542	Open in IMG/M
3300010155\|Ga0098047_10412749	Not Available	505	Open in IMG/M
3300013098\|Ga0164320_10514482	Not Available	611	Open in IMG/M
3300017702\|Ga0181374_1056882	Not Available	663	Open in IMG/M
3300017702\|Ga0181374_1065100	Not Available	614	Open in IMG/M
3300017704\|Ga0181371_1055460	Not Available	644	Open in IMG/M
3300017718\|Ga0181375_1028564	Not Available	948	Open in IMG/M
3300017730\|Ga0181417_1000591	Not Available	11841	Open in IMG/M
3300017765\|Ga0181413_1187462	Not Available	619	Open in IMG/M
3300017772\|Ga0181430_1023974	All Organisms → Viruses → Predicted Viral	1989	Open in IMG/M
3300017775\|Ga0181432_1141344	Not Available	736	Open in IMG/M
3300017775\|Ga0181432_1171999	Not Available	672	Open in IMG/M
3300020399\|Ga0211623_10295499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300021068\|Ga0206684_1043398	Not Available	1576	Open in IMG/M
3300021084\|Ga0206678_10044505	All Organisms → Viruses → Predicted Viral	2410	Open in IMG/M
3300021442\|Ga0206685_10003871	Not Available	4582	Open in IMG/M
3300021442\|Ga0206685_10016516	Not Available	2318	Open in IMG/M
3300021442\|Ga0206685_10239600	Not Available	613	Open in IMG/M
(restricted) 3300024052\|Ga0255050_10001223	Not Available	3515	Open in IMG/M
(restricted) 3300024052\|Ga0255050_10024661	Not Available	1186	Open in IMG/M
(restricted) 3300024057\|Ga0255051_10341736	Not Available	551	Open in IMG/M
(restricted) 3300024517\|Ga0255049_10396378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10388713	Not Available	675	Open in IMG/M
3300025038\|Ga0208670_127356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300025066\|Ga0208012_1021504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1042	Open in IMG/M
3300025066\|Ga0208012_1036772	Not Available	743	Open in IMG/M
3300025069\|Ga0207887_1034795	Not Available	813	Open in IMG/M
3300025096\|Ga0208011_1010350	Not Available	2611	Open in IMG/M
3300025096\|Ga0208011_1012576	Not Available	2305	Open in IMG/M
3300025096\|Ga0208011_1031695	Not Available	1294	Open in IMG/M
3300025108\|Ga0208793_1081928	Not Available	929	Open in IMG/M
3300025109\|Ga0208553_1087890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	730	Open in IMG/M
3300025110\|Ga0208158_1059450	Not Available	931	Open in IMG/M
3300025112\|Ga0209349_1165000	Not Available	587	Open in IMG/M
3300025118\|Ga0208790_1147549	Not Available	653	Open in IMG/M
3300025118\|Ga0208790_1155662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300025122\|Ga0209434_1142437	Not Available	656	Open in IMG/M
3300025128\|Ga0208919_1037628	Not Available	1716	Open in IMG/M
3300025128\|Ga0208919_1192691	Not Available	615	Open in IMG/M
3300025131\|Ga0209128_1054043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1452	Open in IMG/M
3300025131\|Ga0209128_1071949	Not Available	1186	Open in IMG/M
3300025131\|Ga0209128_1097826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300025133\|Ga0208299_1087398	Not Available	1080	Open in IMG/M
3300025133\|Ga0208299_1202673	Not Available	587	Open in IMG/M
3300025133\|Ga0208299_1242878	Not Available	511	Open in IMG/M
3300025141\|Ga0209756_1107433	Not Available	1191	Open in IMG/M
3300025301\|Ga0208450_1138758	Not Available	505	Open in IMG/M
3300026103\|Ga0208451_1030543	Not Available	634	Open in IMG/M
3300026115\|Ga0208560_1019514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
(restricted) 3300027856\|Ga0255054_10123303	Not Available	1282	Open in IMG/M
(restricted) 3300027868\|Ga0255053_10075716	Not Available	1603	Open in IMG/M
3300031775\|Ga0315326_10161911	Not Available	1471	Open in IMG/M
3300032088\|Ga0315321_10687958	Not Available	595	Open in IMG/M
3300032360\|Ga0315334_10979016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	76.42%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.55%
Inlet	Environmental → Aquatic → Marine → Inlet	6.60%
Strait	Environmental → Aquatic → Marine → Strait	4.72%
Coastal	Environmental → Aquatic → Marine → Coastal	2.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.94%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	73.58%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.72%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.94%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	64.15%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	7.55%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	7.55%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	6.60%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.72%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.83%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.83%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	1.89%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.94%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001743	Marine viral communities from the Pacific Ocean - LP-38	Environmental	Open in IMG/M
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300005427	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65	Environmental	Open in IMG/M
3300005605	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006768	Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006923	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007513	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008051	Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300008952	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um	Environmental	Open in IMG/M
3300009129	Combined Assembly of Gp0139513, Gp0139514	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009620	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300013098	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm	Environmental	Open in IMG/M
3300017702	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG	Environmental	Open in IMG/M
3300017704	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG	Environmental	Open in IMG/M
3300017718	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020399	Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)	Environmental	Open in IMG/M
3300021068	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015	Environmental	Open in IMG/M
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300024052 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5	Environmental	Open in IMG/M
3300024057 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9	Environmental	Open in IMG/M
3300024517 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300025038	Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)	Environmental	Open in IMG/M
3300025066	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025131	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300026103	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)	Environmental	Open in IMG/M
3300026115	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)	Environmental	Open in IMG/M
3300027856 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23	Environmental	Open in IMG/M
3300027868 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22	Environmental	Open in IMG/M
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24515J20084_10119641	3300001743	Marine	YKFKNRTLRFVKVEDIRFTILEYKDNKIDAKQLVEKLEQLINKYE*
JGI25133J35611_100612904	3300002514	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYEKNK*
JGI25133J35611_101155561	3300002514	Marine	KMSYKNTLRYIRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE*
Ga0066851_100444393	3300005427	Marine	MSYKNTLRYIRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0066850_102015054	3300005605	Marine	LRYIRIEEIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0098033_10428193	3300006736	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKELVEKLEQLINKYE*
Ga0098033_12349512	3300006736	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098035_10386547	3300006738	Marine	MSYKNTLRFVRIEDIRLPILEYKDNKIDAKQLVERLEQLINKYE*
Ga0098035_10637233	3300006738	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0098035_10891454	3300006738	Marine	MKKTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098035_11959722	3300006738	Marine	MKKTLRFVRIEDIRFPILEYKEKKIDAKKLVEKLEKLINKYE*
Ga0098035_12036232	3300006738	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE*
Ga0098058_10626971	3300006750	Marine	TLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0098058_10996762	3300006750	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDATQLVEKLEQLINKYE*
Ga0098040_10238198	3300006751	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKINAKQLIEKLEQLINKYE*
Ga0098040_10271963	3300006751	Marine	MKKTLRFVRIEDIRLPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098040_10780313	3300006751	Marine	MSYKNTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098048_12319943	3300006752	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLINKY
Ga0098039_11978772	3300006753	Marine	MKKTLRFIRIEDIRYPILEYKDNKIDAKELINKLEKLINK*
Ga0098044_11839541	3300006754	Marine	MSYKKTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0098071_1011702	3300006768	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELITKLEKLINKYEKNK*
Ga0098054_10291405	3300006789	Marine	MKKTLRFVRIEEIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0098054_13085233	3300006789	Marine	MKKTLRFVRVEDIRFPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098055_10496381	3300006793	Marine	KMSYKNTLRYIRIEEIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0098055_12648793	3300006793	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098053_10612761	3300006923	Marine	IRIEEIRFPILEYKDNKIDATQLVEKLEQLINKYE*
Ga0098053_10645713	3300006923	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0098057_11557981	3300006926	Marine	KNTLRFVRIEDIRFPILEYKDNKIDAKELVKKLEQLINKYE*
Ga0098041_11103543	3300006928	Marine	MVKMKKTLRFVRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE*
Ga0098036_10236586	3300006929	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEEVINE*
Ga0105019_10710461	3300007513	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVNKLEKLINKDEKNKQTI*
Ga0110931_11639463	3300007963	Marine	MSYKNTLRYIRIEEIRYPILEYKDNKIDAKELVEKLEKLINKYE*
Ga0098052_11472394	3300008050	Marine	YKNTLRYIRIEEIRFPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098052_12165144	3300008050	Marine	MSYKNTLRFVRIEDIRYPILEYKDNKIDAKELINKLEKLIN
Ga0098052_12310293	3300008050	Marine	MSYKNTLRYIRIEEIRYPILEYKDNKIDAKELINKLEKLINKYE*
Ga0098062_10533933	3300008051	Marine	KMKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0114910_100364510	3300008220	Deep Ocean	MNYKKTLRFVRIEDIRFPILEYKDNKIDAKKLVEKLEKLINKYE*
Ga0115651_10024113	3300008952	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVNKLEKLINKYEKNK*
Ga0118728_10056338	3300009129	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYEKNK*
Ga0114909_11596653	3300009414	Deep Ocean	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKYE*
Ga0114908_10831643	3300009418	Deep Ocean	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0114925_106354474	3300009488	Deep Subsurface	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKQI*
Ga0114925_107309982	3300009488	Deep Subsurface	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEQLINKYE*
Ga0114920_101107323	3300009528	Deep Subsurface	MIRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0114900_10709153	3300009602	Deep Ocean	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEEVIN*
Ga0114911_10030942	3300009603	Deep Ocean	MNYKKTLRFVKIEDIRYPILEYKDNKIDAKELINKLEKLINKYE*
Ga0114906_11348173	3300009605	Deep Ocean	MKKTLRFVRIEDIKFPILEYKDNKIDAQQLVEKLEQLINKYE*
Ga0114912_11479122	3300009620	Deep Ocean	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEVINE*
Ga0098049_10527721	3300010149	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYD*
Ga0098056_12286743	3300010150	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVEKLEKLINKYE*
Ga0098059_14242181	3300010153	Marine	KMSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLINKYE*
Ga0098047_101208473	3300010155	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVERLEQLINKYE*
Ga0098047_103648833	3300010155	Marine	YKRQTRFVRIEDIRFPILEYKDNKIDAKELVKKLEQLINKYE*
Ga0098047_104127493	3300010155	Marine	MKKILRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE*
Ga0164320_105144824	3300013098	Marine Sediment	FVKVEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE*
Ga0181374_10568824	3300017702	Marine	RFVRIEDIRFPILEYKDNKIDAKELVEKLEKLINKYE
Ga0181374_10651001	3300017702	Marine	IMKKTLRFVRMEEIRFHILEYKDNKIDAKQLVEKLEKLINKYE
Ga0181371_10554603	3300017704	Marine	MKKTLRFVRIEDIRFPILEYKDNKINAKQLIEKLEQLINKYE
Ga0181375_10285645	3300017718	Marine	MSYKNTLRFVRIEDIRFLILEYKDNKIDAKELINKLEEVINE
Ga0181417_10005913	3300017730	Seawater	MVKMKKTLRFVRIEEIRFPILEYKDNKIDAKELVEKLEKLINKLNK
Ga0181413_11874621	3300017765	Seawater	TLRFVRIEDIRFPILEYKDNKIDAKELVEKLEKLINKLNK
Ga0181430_10239743	3300017772	Seawater	MKKTLRFVRIEEIRFPILEYKDNKIDAKELINKLEKLINKYE
Ga0181432_11413443	3300017775	Seawater	MIRIEDIRFPILEYKDNKIDAKELINKLEKLINKYEKNK
Ga0181432_11719992	3300017775	Seawater	MGYKRQIRFVRIEDIRFPILEYKDNKIEAKELVEKLEKLINND
Ga0211623_102954993	3300020399	Marine	MIRIEDIRFLILEYKDNKIDAKELINKLEQLINKYE
Ga0206684_10433984	3300021068	Seawater	MKKTLRFVRIEDIRFLILEYKDNKIDAKELINKLEKLINKYE
Ga0206678_100445053	3300021084	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE
Ga0206685_1000387113	3300021442	Seawater	MKKTLRFVRIEDIRLPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0206685_100165168	3300021442	Seawater	MIRIEDIRFPILEYKDNKIDAKELINKLEKLINKYE
Ga0206685_102396002	3300021442	Seawater	MKKTLRFIRIEDIRFPILEYKDGKINANELVEKLEIIINEIDLTSRYE
(restricted) Ga0255050_1000122310	3300024052	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVTKLEKLINKYE
(restricted) Ga0255050_100246612	3300024052	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELITKLEKLINKYEKNK
(restricted) Ga0255051_103417363	3300024057	Seawater	YTKIMKKTLRFVRIEDIRFPILEYKDNKIDAKELITKLEKLINKYEKNK
(restricted) Ga0255049_103963781	3300024517	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEQLINKYE
(restricted) Ga0255048_103887134	3300024518	Seawater	MIRIEDIRFPILEYKDNKIDAKELINKLEQLINKYE
Ga0208670_1273563	3300025038	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVNKLEKLINKYEKNK
Ga0208012_10215045	3300025066	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE
Ga0208012_10367722	3300025066	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE
Ga0207887_10347954	3300025069	Marine	RFVKVEDIRFPILEYKDNKIDANKLVEKLEKLINKYE
Ga0208011_10103505	3300025096	Marine	MSYKNTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0208011_10125765	3300025096	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKINAKQLIEKLEQLINKYE
Ga0208011_10316954	3300025096	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKQLVEKLEQLINKYE
Ga0208793_10819284	3300025108	Marine	YKNTLRYIRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE
Ga0208553_10878904	3300025109	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLIN
Ga0208158_10594503	3300025110	Marine	MVKMKKTLRFVRIEEIRFPILEYKDNKIDAKELVEKLEKLINKYE
Ga0209349_11650003	3300025112	Marine	MKKILRFVRIEDIRFLILEYKDNKIDAKELVTKLEKLINKYE
Ga0208790_11475494	3300025118	Marine	YTKMSYKNTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0208790_11556623	3300025118	Marine	MKKTLRFVRIEDIRLPILEYKDNKIDAKQLVEKLEKLINK
Ga0209434_11424373	3300025122	Marine	MSYKNTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEQLINKYE
Ga0208919_10376281	3300025128	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEEVINE
Ga0208919_11926913	3300025128	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINK
Ga0209128_10540437	3300025131	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKQLVEKLEQ
Ga0209128_10719493	3300025131	Marine	MSYKNTLRYIRIEEIRFPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0209128_10978263	3300025131	Marine	MKKTLRFVRIEEIRFPILEYKDNKIDAKQLVEKLEQLINKYE
Ga0208299_10873984	3300025133	Marine	MKKTLRFVRIEDIRFPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0208299_12026731	3300025133	Marine	MSYKNTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKQI
Ga0208299_12428783	3300025133	Marine	MSYKNTLRYIRIEEIRYPILEYKDNKIDAKELVEKLEKLINKYE
Ga0209756_11074331	3300025141	Marine	MKKTLRFVRIEDIRFPILEYKDNKIEAKQLVEKLEKLINKYE
Ga0208450_11387583	3300025301	Deep Ocean	VKIEDIRYPILEYKDNKIDAKELINKLEKLINKYE
Ga0208451_10305433	3300026103	Marine Oceanic	MQKQKKELKMKRTKRFVRIEDIRFPILEYKDGKINAKKLVEKLEKIINELEL
Ga0208560_10195141	3300026115	Marine Oceanic	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEKLINKYEKNK
(restricted) Ga0255054_101233036	3300027856	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVIKLEKLINKYE
(restricted) Ga0255053_100757165	3300027868	Seawater	MKKTLRFVRIEDIRFLILEYKDNKIDAKELINKLEQLINKYE
Ga0315326_101619111	3300031775	Seawater	MKKTLRFVRIEDIRFPILEYKDNKIDAKELINKLEQL
Ga0315321_106879583	3300032088	Seawater	MKKTLRFVRIEDIRFLILEYKDNKIDAKELINKLEEVINE
Ga0315334_109790161	3300032360	Seawater	MKKTLRFVRIEDIRLPILEYKDNKIDAKQLVEKLEKLINKY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters