NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092862

Metagenome Family F092862

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092862
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 38 residues
Representative Sequence MIEEKCKFCGSTELVYHQYVICDSSCQECGEWQNGETI
Number of Associated Samples 88
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 32.08 %
% of genes near scaffold ends (potentially truncated) 37.38 %
% of genes from short scaffolds (< 2000 bps) 74.77 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.748 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(56.075 % of family members)
Environment Ontology (ENVO) Unclassified
(83.178 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.439 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1BBAY94_101593692
2JGI24006J15134_101089723
3JGI24003J15210_100961523
4JGI25132J35274_10266352
5JGI25132J35274_10492541
6Ga0066856_101394823
7Ga0066845_104271252
8Ga0070724_100093783
9Ga0078746_10445152
10Ga0098038_10389854
11Ga0098033_10668512
12Ga0098033_11105753
13Ga0098037_11734432
14Ga0098035_11404232
15Ga0098035_12690661
16Ga0098035_13061243
17Ga0098040_10704152
18Ga0098044_10455701
19Ga0098044_11002683
20Ga0098044_13062133
21Ga0098054_10144304
22Ga0098054_11837452
23Ga0098055_12887311
24Ga0098053_10098802
25Ga0098053_10144005
26Ga0098041_10853224
27Ga0098041_12157463
28Ga0098036_11900051
29Ga0098036_12060402
30Ga0099846_10985643
31Ga0105739_11562031
32Ga0105741_10753831
33Ga0098052_11526672
34Ga0117902_11946636
35Ga0114995_100527077
36Ga0114993_101570435
37Ga0115553_11510983
38Ga0115553_14271332
39Ga0115560_11299802
40Ga0114925_100897131
41Ga0115011_115825163
42Ga0098049_10213902
43Ga0098049_11086002
44Ga0098049_11351342
45Ga0098049_12021124
46Ga0098056_10147174
47Ga0098061_12723452
48Ga0164315_111536253
49Ga0164313_101245097
50Ga0164313_109759821
51Ga0171651_10900505
52Ga0181372_10445582
53Ga0181373_10446524
54Ga0181419_10336504
55Ga0181433_10727512
56Ga0181402_11649182
57Ga0181420_10353241
58Ga0181409_11447421
59Ga0187217_10430153
60Ga0181430_10855645
61Ga0193991_10262071
62Ga0206131_101003423
63Ga0206130_101908081
64Ga0211643_1000239620
65Ga0206684_12798633
66Ga0206683_102438382
67Ga0206685_1000387110
68Ga0196901_11102821
69Ga0233432_100405183
70Ga0233412_102367553
71Ga0228672_100577312
72Ga0255043_100167306
73Ga0209977_103473303
74Ga0207896_10021539
75Ga0208298_10134696
76Ga0208011_11006132
77Ga0208434_11006703
78Ga0208013_10334162
79Ga0208793_11706211
80Ga0208553_11294112
81Ga0208158_10792321
82Ga0208790_10641983
83Ga0208790_10736013
84Ga0208790_11147101
85Ga0209644_10044187
86Ga0208919_10211708
87Ga0208919_11647101
88Ga0209232_100772510
89Ga0209756_10366375
90Ga0209756_10401183
91Ga0209337_11613522
92Ga0208450_10792401
93Ga0209716_10177903
94Ga0208407_10498614
95Ga0209192_100317982
96Ga0209379_100223262
97Ga0209089_104985263
98Ga0255054_100280759
99Ga0209013_100484566
100Ga0255052_100646734
101Ga0255055_100959275
102Ga0209404_103289734
103Ga0183683_100005660
104Ga0307378_101047505
105Ga0308014_11112013
106Ga0315328_107602671
107Ga0348335_028846_2376_2483
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 21.21%    Coil/Unstructured: 78.79%
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Variant

5101520253035MIEEKCKFCGSTELVYHQYVICDSSCQECGEWQNGETISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
39.3%60.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Sediment
Marine
Deep Ocean
Deep Subsurface
Seawater
Marine Sediment
Marine
Aqueous
Seawater
Estuary Water
Seawater
Marine
Marine
Pelagic Marine
Seawater
Marine Sediment
Seawater
Marine
Soil
Macroalgal Surface
56.1%4.7%2.8%2.8%3.7%3.7%2.8%7.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BBAY94_1015936923300000949Macroalgal SurfaceMNKEKCKFCGSDELVYHQYIINDSSCQECGEWQNGETI*
JGI24006J15134_1010897233300001450MarineMSEEKCKFCDSTELVYHQYVICDSSCQECGKWQNEKTI*
JGI24003J15210_1009615233300001460MarineMNEEKCKFCDSTELVYHQYVICDSSCQECGEWQNEET
JGI25132J35274_102663523300002483MarineMSKEKCNFCGSTEMVYHQYIICDSICQECGEWQKGEYNYE*
JGI25132J35274_104925413300002483MarineEIMSKEKCKFCGSTEMVYHQYIICDSMCQECGEWQKGEYNYE*
Ga0066856_1013948233300005404MarineMSKEKCKFCGSTEMVYHQYIICDSMCQECGEWQKGEYNYE*
Ga0066845_1042712523300005432MarineMSKEKCKFCGSTEMVYHQYIIRDSMCQECGEWQKGEYNYE*
Ga0070724_1000937833300005609Marine SedimentMIEEKCKFCGSTELVYHQYVICDSSCQECGEWQNGETI*
Ga0078746_104451523300005821Marine SedimentMSKEKCKFCGSDELVYHQYVIQDSACQECGEWQNEETI*
Ga0098038_103898543300006735MarineMEKEKCKFCGSEELVYHQYIICDNSCQECGKWQNGETINK*
Ga0098033_106685123300006736MarineMENEKCKFCNSTELVYHSYLCDSKCQDCGEWQEGEELNLHLIK*
Ga0098033_111057533300006736MarineMNKEDCKFCGSEELVYHQYIICDSCCQECGEWQNGEEL*
Ga0098037_117344323300006737MarineMEETKCKFCGSTELVYHQYTICDSACQECGEWQDGEYIK*
Ga0098035_114042323300006738MarineMNKEKCKFCGDTALVYHHYICDSKCEECGEWQEGEKYE*
Ga0098035_126906613300006738MarineEKCKFCDSTALVYHYYICDSTCEECGKWQEGEKI*
Ga0098035_130612433300006738MarineMENEKCKFCNSTELVYHSYLCDSKCQDCGEWQEGEELNLNLIK
Ga0098040_107041523300006751MarineMENEKCKFCNSIALVYNYSLCDSTCEECGEWQEGEER*
Ga0098044_104557013300006754MarineMNKEKCKFCGDTTLVYHYYICDSKCEECGEWQEGEKYE*
Ga0098044_110026833300006754MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKYEK
Ga0098044_130621333300006754MarineMIKEKFKFCNSTALVYNYSLCDSKCEECGEWQEGEEIK
Ga0098054_101443043300006789MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKI*
Ga0098054_118374523300006789MarineMNKDKCKFCDDTALVYHYYICDSKCEECGEWQEGEKYE*
Ga0098055_128873113300006793MarineIIMIKEKCKFCNSTALVYNYSLCDSKCEECGEWQEGEEIYVKKIY*
Ga0098053_100988023300006923MarineMENEKCKFCNSIALVYNYSLCDSTCEECGKWQEGEKI*
Ga0098053_101440053300006923MarineMNKEKCKFCDSTALVYHYYICDSKCEECGEWQEGEK
Ga0098041_108532243300006928MarineMNKEKCKFCGSEELVYHQYIICDNSCQECGKWQNGETINK*
Ga0098041_121574633300006928MarineEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEER*
Ga0098036_119000513300006929MarineMENEKCTFCNSIALVYNYLLCDSKCEECGEWQEGEER*
Ga0098036_120604023300006929MarineMNKEKCKFCGDIALVYHYSICDSKCEECGEWQEGEKYE*
Ga0099846_109856433300007542AqueousMNEEKCKFCDSTELVYHQYVICDSSCQECGEWQNEETI*
Ga0105739_115620313300007954Estuary WaterTKVRVMIEEKCKFCGNTELVYHQYVICDSSCQECGEWQNGETI*
Ga0105741_107538313300007956Estuary WaterIMIEEKCKFCGSTELVYHQYVICDSSCQECGEWQNGETI*
Ga0098052_115266723300008050MarineMNKEKCKFCGSKELVYHQYIICDYSCEECGEWQNGEE
Ga0117902_119466363300009104MarineMENEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEKI*
Ga0114995_1005270773300009172MarineMSEEKCKFCDSTELVYHQYVICDSSCQECGEWQNEETI*
Ga0114993_1015704353300009409MarineMKKCKFCGSKELTYHQYIIMDYSCCECGEWQNGDYINE*
Ga0115553_115109833300009445Pelagic MarineMSKEKCKFCGSKELVYHQYVICDSSCQECGEWQNGETI*
Ga0115553_142713323300009445Pelagic MarineMSKEKCKFCGSKELVYHQYVICDSSCQECGEWQNGETI*V
Ga0115560_112998023300009447Pelagic MarineMSKEKCKFCGSKELVYHQYVICDSSCQECGEWQNG
Ga0114925_1008971313300009488Deep SubsurfaceMEKVKCKFCGGEELVYHQYIICDHSCEECGEWQNGEYI*
Ga0115011_1158251633300009593MarineMIKEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEEIK*
Ga0098049_102139023300010149MarineMNKEKCKFCGSTALIYHYYICDSTCEECGKWQEGEKYEKINI*
Ga0098049_110860023300010149MarineMIKEKCKFCNSTALVYNYSLCDSKCEECGEWQEGEEIK*
Ga0098049_113513423300010149MarineMNKEKCKFCGDTALVYHYYICDSKCEECGEWQEGEKYE*
Ga0098049_120211243300010149MarineMIKEKCKFCNSTALVYNYSLCDSKCEECGEWQEGE
Ga0098056_101471743300010150MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKYEKINI*
Ga0098061_127234523300010151MarineMIKEKCKFCNSTALVYNYSLCDSKCEECGEWQEGEEIYVKKIY*
Ga0164315_1115362533300013099Marine SedimentIKQLKMENEKCKFCNSTELVYHSYLCDSKCQDCGEWQEGEER*
Ga0164313_1012450973300013101Marine SedimentMIKEKCKFCNSTALVYHHSFHFADSKCEECGEWQEGEEIK*
Ga0164313_1097598213300013101Marine SedimentMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDY
Ga0171651_109005053300013115MarineMENEKCKFCNSIALVYNYSLCDSKCEECGQWQEGEK
Ga0181372_104455823300017705MarineMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYL
Ga0181373_104465243300017721MarineMEKCKFCGSTELVYHQYVICDSACQECGEWQNGDYITQTKYEH
Ga0181419_103365043300017728SeawaterMIEEKCKFCGSTELVYHQYIICDSSCQDCGEWQNGE
Ga0181433_107275123300017739SeawaterMRYLKKEKMDKCKFCGSTELVYHQYVICDSVCQECGEWQKGEYNYE
Ga0181402_116491823300017743SeawaterCLKHLEIMSKEKCKFCGSTELVYHQYIICDSSCQDCGEWQNGEEI
Ga0181420_103532413300017757SeawaterEIMSKEKCKFCGSTELVYHQYIICDSSCQACGEWQNGEEI
Ga0181409_114474213300017758SeawaterEKCKFCGSTELVYHQYIICDSSCQDCGEWQNGEEI
Ga0187217_104301533300017770SeawaterMNEEKCKFCDSTELVYHQYVIRDSSCQECCEWQNGETI
Ga0181430_108556453300017772SeawaterMENEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEEIK
Ga0193991_102620713300019720SedimentMNEDKCKFCGSTELVYHQYTICDSSCQECGEWQSGDYI
Ga0206131_1010034233300020185SeawaterMNEDKCKFCDSTELVYHQYVICDSSCQECGEWQNEETI
Ga0206130_1019080813300020187SeawaterMNKEKCKFCGSDELVYHQYVIQDSACQECGEWQNEETI
Ga0211643_10002396203300020457MarineMEKEKCKFCGSEELVYHQYIICDNSCQECGKWQNGETINK
Ga0206684_127986333300021068SeawaterMSKCKFCDSTALVYHSYICDSKCEECGEWQEGEDIIV
Ga0206683_1024383823300021087SeawaterMNKEKCKFCGDIALVYHYSICDSKCEECGEWQEGEKYE
Ga0206685_10003871103300021442SeawaterMENEKCKFCNSIALVYNYSLCDSKCEECGEWQEGEER
Ga0196901_111028213300022200AqueousMNEEKCKFCDSTELVYHQYVICDSSCQECGEWQNEETI
(restricted) Ga0233432_1004051833300023109SeawaterMSKCKFCGSKELVYHQYVIRDSSCQECGEWQNGETI
(restricted) Ga0233412_1023675533300023210SeawaterEKKCKFCGSTELVYHQYVIRDSSCQECGEWQNGETI
Ga0228672_1005773123300024335SeawaterMSKCKFCGSTELVYHQYVICDSSCQECGEWQNGETIRNYE
(restricted) Ga0255043_1001673063300024338SeawaterKKCKFCGSTELVYHQYVIRDSSCQECGEWQNGETI
Ga0209977_1034733033300024432Deep SubsurfaceMEKVKCKFCGGEELVYHQYIICDHSCEECGEWQNGEYI
Ga0207896_100215393300025071MarineMNEEKCKFCNDTALVYNFYICDSKCEECGEWQEGESYE
Ga0208298_101346963300025084MarineMIKEKCKFCNSTALVYNYSLCDSKCEECGEWQEGEEIK
Ga0208011_110061323300025096MarineMNKEKCKFCGDTALVYHYYICDSKCEECGEWQEGEKYE
Ga0208434_110067033300025098MarineKFCGSTELVYHQYVICDSSCQECGEWQNGETIRNYE
Ga0208013_103341623300025103MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKI
Ga0208793_117062113300025108MarineMNKCKFCGSTKLVYHQYIICDSKCQECGEWQNGDYLEDQDLS
Ga0208553_112941123300025109MarineMNKEECKFCGSEELVYHQYIICDSCCQECGEWQNGEEL
Ga0208158_107923213300025110MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKYEKINI
Ga0208790_106419833300025118MarineMNKEKCKFCGSTALVYHYYICDSTCEECGKWQEGEKYE
Ga0208790_107360133300025118MarineMNKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEDQSL
Ga0208790_111471013300025118MarineMNKEKCKFCDSTALVYHYYICDSKCEECGEWQEGEKI
Ga0209644_100441873300025125MarineMSKEKCKFCNSTELIYHYYLCDSKCQDCGEWQEGETI
Ga0208919_102117083300025128MarineMENEKCTFCNSIALVYNYLLCDSKCEECGEWQEGEER
Ga0208919_116471013300025128MarineMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEGQDL
Ga0209232_1007725103300025132MarineMSKEKCNFCGSTEMVYHQYIICDSICQECGEWQKGEYNYE
Ga0209756_103663753300025141MarineMNKCKFCDSTALVYHYYICDSKCEECGEWQEGEEL
Ga0209756_104011833300025141MarineMNKCKFCGSTELVYHQYIICDSSCQDCGEWQNGEEI
Ga0209337_116135223300025168MarineMSEEKCKFCDSTELVYHQYVICDSSCQECGKWQNEKTIXH
Ga0208450_107924013300025301Deep OceanMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEDQSLLST
Ga0209716_101779033300025626Pelagic MarineMSKEKCKFCGSKELVYHQYVICDSSCQECGEWQNGETI
Ga0208407_104986143300026257MarineMNKEKCKFCDDTTLVYHYYICDSKCEECGEWQEGEKYE
Ga0209192_1003179823300027752MarineMSEEKCKFCDSTELVYHQYVICDSSCQECGEWQNEETI
Ga0209379_1002232623300027758Marine SedimentMIEEKCKFCGSTELVYHQYVICDSSCQECGEWQNGETI
Ga0209089_1049852633300027838MarineMKKCKFCGSKELTYHQYIIMDYSCCECGEWQNGDYINE
(restricted) Ga0255054_1002807593300027856SeawaterMNKEKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEDQDLSST
Ga0209013_1004845663300027858MarineMSKCKFCGSKELVYHQYGICDSSCQECGEWQNGETI
(restricted) Ga0255052_1006467343300027865SeawaterMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEGQDLS
(restricted) Ga0255055_1009592753300027881SeawaterMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEDQ
Ga0209404_1032897343300027906MarineMIKEKCKFCNSIALVYNYSLCDSKCEECSEWQEGEEIK
Ga0183683_1000056603300029309MarineMEETKCKFCGSTELVYHQYTICDSSCQECGEWQDGEYIK
Ga0307378_1010475053300031566SoilMNEEKCKFCNDTALVYNSYICDSKCEECGEWQEGESYE
Ga0308014_111120133300031628MarineMNKCKFCGSKELTYHQYVIMDYSCDECGEWQNGDYINE
Ga0315328_1076026713300031757SeawaterMSKCKFCGSTELVYHQYIICDSKCQECGEWQNGDYLEDQD
Ga0348335_028846_2376_24833300034374AqueousSECKFCGSTELVYHQYVIRDSSCQDCGEWQNGETI


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