Scaffold Ga0224423_10006346

Overview

Basic Information

• Taxon OID: 3300021431
• Scaffold ID: Ga0224423_10006346
• Source Dataset Name: Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14395
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (93.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location

• Location Name: New Zealand
• Coordinates
  • Lat. (^o): -42.26
  • Long. (^o): 171.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065282	Metagenome / Metatranscriptome	127	Y
F089609	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224423_1000634619	F089609	AGGAG	MSELDIIIFAISGVAIILISLYVVISMTQDINKTIYKCNEIEAWAKNELERRTE
Ga0224423_1000634628	F065282	AGGTGG	MTEEKIICQTYSEMAQVLREAKEAGHAAWWNSEELRNGELIVYVRKEEENG